GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACATGTTTACCAAAGCCTAGACAGTTCCATATTTGTATAATAAT
AGAATGGATACATTTTAGAAATTATTTAGTAAAACATTGTAATAGACCCA
GAGGCTTATGAGATACTGCTTTCAGTATGAAATGTACATATCTCTTTAAG
TCACAAAAGTAAGAATGAAATGTAACTTCTAACTAATTTATAAATCTGTA
TATAAATACTTCCCAGGTCTTGATGTTTGTAATATATCACTCACATCTAA
ACTACATTGTTCATCCCTACTATATAATCTGATTTATTATAAATTTTCAT
GTTTTATGTTTTCCATATTTTATAGATTTGCATTTTCATATACTTACACA
ACATATGTAAGCATCAAAGAAAGGATATTAGCTAATATTGTGATATGAAA
GAATTGTTAGCACAGTTCCTAATTCATATATTTGTAGATGTATATTGTTA
ATATAGTCATTCAGTAGCAATATTTTTATCTAAAATGTCCTTCACTCTAT
ATGAAAGAAAATGTCCGCTTCTCCTAGGTACATAGGAATTTCCATATAAA
CCAAGGCTATTCACTTAGGTAATTACTTTTTCTTGACTACCTTTTTTCAA
ATATTTTAAGGATTTAGTCACACATATGTGAGCCCCCTTATCCGTTTATC
CCCCCATAACGCTTCTAGAAAGGGCTATATTCCCCTTTTCCTTTTTCCTG
GTCTGGAAATAAACCCACTTATTTA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAAACCAAATAGGCGAAGGAA
GTGAACAAAACCACCCAAGATCTTAAAATAGAAATAGAAACAATAAAGAA
ATTACAAAGGGAGACAACCACAGAGATAAAATCATAGGAAAGAGATCAGG
AGTCACAGATGCAAGTATCACCAACAGAATACAAGAGAGAGAAGAATCTC
AGGTGCAGAAGATACCATAGAAAACATTGACACAACAGTCAAAGAAGTTA
CAAAAAGCAAAAAGCTTCTATTCCAAAACATCCAGGAAATCCAAGACATG
ATGAGAAGACCAAACCTAAGGATAGTAGGTATAGAAGAGAGCGAAGATTC
CCAACTTAAAGGGCCAGTCAATATCTTCAACAAAATTGTAGAAAAAAACC
TCCCTAACCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGA
ACTCCAAATAATCTGGACCAGAAAAGAAATTCCTCCCGACACATAATAAT
CAAAAACACCACATGAACTGAAAGAAAGAAAGAAAGAAAGATTGAAAGAA
AGACAGAAAGAAAGATAGAAAGAATGAAGGACAGAAAGAATGAAAGAATG
AAGATTGAAAGGAAGAAGGAAAGAAAGAAAGAATGAAAGAAAGGAAACCT
TTAAAAGGGCTAAGGGTAACAGGGCCTGGAACATATTAAGGCGAACCTAA
AATAATTGGCCCCGA

Query= MSMg01no395_k16.b1 MSMg01no395_k16.b1 CHROMAT_FILE:
MSMg01no395_k16.b1 PHD_FILE: MSMg01no395_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:35 2005
         (465 letters)



>mm_chrX_63924048_63924912
          Length = 865

 Score =  876 bits (453), Expect = 0.0
 Identities = 459/461 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatgtttaccaaagcctagacagttccatatttgtataataatagaatggata 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaattcacatgcttaccaaagcctagacagttccatatttgtataataatagaatggata 606

                                                                       
Query: 65  cattttagaaattatttagtaaaacattgtaatagacccagaggcttatgagatactgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cattttagaaattatttagtaaaacattgtaatagacccagaggcttatgagatactgct 546

                                                                       
Query: 125 ttcagtatgaaatgtacatatctctttaagtcacaaaagtaagaatgaaatgtaacttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttcagtatgaaatgtacatatctctttaagtcacaaaagtaagaatgaaatgtaacttct 486

                                                                       
Query: 185 aactaatttataaatctgtatataaatacttcccaggtcttgatgtttgtaatatatcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactaatttataaatctgtatataaatacttcccaggtcttgatgtttgtaatatatcac 426

                                                                       
Query: 245 tcacatctaaactacattgttcatccctactatataatctgatttattataaattttcat 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 425 tcacatctaaactacattgttcatccctactaaataatctgatttattataaattttcat 366

                                                                       
Query: 305 gttttatgttttccatattttatagatttgcattttcatatacttacacaacatatgtaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gttttatgttttccatattttatagatttgcattttcatatacttacacaacatatgtaa 306

                                                                       
Query: 365 gcatcaaagaaaggatattagctaatattgtgatatgaaagaattgttagcacagttcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcatcaaagaaaggatattagctaatattgtgatatgaaagaattgttagcacagttcct 246

                                                    
Query: 425 aattcatatatttgtagatgtatattgttaatatagtcatt 465
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aattcatatatttgtagatgtatattgttaatatagtcatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)