Query= MSMg01no397_e13.b1 MSMg01no397_e13.b1 CHROMAT_FILE:
MSMg01no397_e13.b1 PHD_FILE: MSMg01no397_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:40 2005
(404 letters)
>mm_chrX_109910362_109911165
Length = 804
Score = 617 bits (319), Expect = 0.0
Identities = 332/337 (98%), Gaps = 2/337 (0%)
Strand = Plus / Plus
Query: 1 acattgctagttccagatcagatagagctccacagttaagactctgcctctagcaaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattgctagttccagatcagatagagctccacagttaagactctgcctctagcaaaaga 260
Query: 61 agaatgtagatagcagtaagtatggaaactaaaataagctcttgagaatcctctcattta 120
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Sbjct: 261 agaatgtagatagcagtaagtatggaaactaaaataagctcttgagaatcctctcattta 320
Query: 121 gaaccttttattcagataattttaattttctttaagagatttagttttgtccagttgttt 180
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Sbjct: 321 gaaccttttattcagataattttaattttctttaagagatttagttttgtccagttgttt 380
Query: 181 tcctgaatttccttaagggacttatttatttgctccttaaggaacttaatcatctcatga 240
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Sbjct: 381 tcctgaatttccttaagggacttatttatttgctccttaaggaacttaatcatctcatga 440
Query: 241 aattggttttattctctgtctctgtctctgtctgtctctgtctgtctctgtctctgtctc 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattggttttaagctctgtctctgtctctgtctgtctctgtctgtctctgtctctgtctc 500
Query: 301 tctgtctctct--gtctctctttctctctctctctct 335
||||||||||| |||||||| |||||||||||||||
Sbjct: 501 tctgtctctctctgtctctctctctctctctctctct 537
Score = 58.7 bits (30), Expect = 7e-13
Identities = 34/36 (94%), Gaps = 2/36 (5%)
Strand = Plus / Minus
Query: 371 tgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgtgtg 404
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Sbjct: 87 tgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtg 52
Score = 58.7 bits (30), Expect = 7e-13
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 371 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 404
||||| ||||||||||||||||||||||||||||
Sbjct: 93 tgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtg 60
Score = 58.7 bits (30), Expect = 7e-13
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 371 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 404
||||||||||||||||||||||||||||| ||||
Sbjct: 117 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtg 84
Score = 58.7 bits (30), Expect = 7e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 374 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 403
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Sbjct: 118 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 89
Score = 58.7 bits (30), Expect = 7e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 372 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 401
||||||||||||||||||||||||||||||
Sbjct: 118 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 89
Score = 56.8 bits (29), Expect = 3e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 376 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 404
|||||||||||||||||||||||||||||
Sbjct: 118 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 7
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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