BAC Information

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BAC

Clone NameMSMg01-397M19
ChromosomeX (Build37)
Map Location 108,012,081 - 108,012,186
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC245573, EG634340, LOC668530, LOC100043316, Pou3f4
Downstream geneCylc1, LOC100042872, Rps6ka6, EG664791, D030011N01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397M19.T7 (MSMg01no397_m19.b1)MSMg01-397M19.TJ (MSMg01no397_m19.g1)
ACCAG498054AG498055
length780789
length of high quality
(start - end)
107 (184 - 290)---
definitionCHROMAT_FILE: MSMg01no397_m19.b1 PHD_FILE: MSMg01no397_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:21 2005CHROMAT_FILE: MSMg01no397_m19.g1 PHD_FILE: MSMg01no397_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
CAAGGTCTTCCAGGCCTGTGCATGAAGTTTGCCACAGGCCGGCAGCTTAA
TCGGGGTGACAACCTGCGCTACCCTATGTACACTCTCCTAGATGAAAGAC
TTGGCCTTCACAAATGGTGGCTTTCGAAGGAGACCACTACCCAAAGACTC
TGGCGCCCTATTGGGCCAGCGCCTCCCAGTTCAGTTCACCTCCAGTTCGC
CGCTCGCTCTCAGGGTGAGAAACGCTCTCGGTAGGGTGGAGAGGGTGTAG
GCATCTTCAGCTTCGTGCGTATAGACAATAAAATAATTGGCAAAAGTCAC
GAAGATTCTGGTCCAGCCGCACACCACCTCCTCCCTCTTGTACATACCAA
GGTCTGAGGAAGCTCTTACGGAGCCCTTCTCAGTGTCTTTGACAAGCACA
GCTGGTGGAAGCCCAAGGCGCACATCGAGCGAGCTAGCGAGCGCCTGGGC
GGCTAAGTTTATGCTTTTTTTTTTCTTTTAAAAATCTGTGTGTATGTATT
TCTGTGAGTGTGTGGTGTGCGCGTGCAAACGTATGTGTGTAGATAGCTGT
GTGTACCGTATTACTGTATACAAAAAAAAAAATGAAAAAAAAACCTCCTT
AGACTATGTAGAGATCCCCCAACCAAACGGTTGCCCGGGGCTTTATGGTA
AACTTTCTCTCATGTCCCCCGAACAGGTTTCAGGTGGGCCTCCCTCCCCC
CCAAAGAATGTGGTTCGTGCCCCTCGAAAG
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAAGCCTGACAGACAGCTTTAGTGAAGTACCT
GGATATAATATTAACTCAAACAAGTCGATGGCCTTTCTCTACACTCAGGA
CAAACGGTCTGTACAAAGAAATTATATATAACCCCCACTTCTCCATTGTC
ACAAATAATATAAAATACCTTGGCGTGACTTTAACTAAGGAAGGGAAAGA
TCTATATGATAAGAACTTCAAGGCTCTAGAGACCTGACCTACAGAAGATC
TCTAAATATGGAAAGATCTCCTTTGCTCATGGATTGACCGGATCAACCTT
GTAACAATGGTTATCTTGTCAAAAGCAATCTACAGATTCAATGCGATCCC
CATCATAATTCCCACTCAATTCTTCAACGAATTAGAGAGGGCAATCGACA
GATTCATTTGGAATAACTAAAAGCCGATGATTGGGAAAACTCTTCTCTAG
GATGAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAGGCTGTACTA
CAGAGCAAGTGGGATCAAAACTGCCTGGTCCTGATGTTAGGGACGAACAG
GAAACCCAGGGAACCGAATTGTATACCCAAAAATGAACCCCTCCCCCAGG
GCCCTTTGTTTTTTTTCAAGGGAGGAAAAACCTTCCCTGGGGGAATAAAA
GAATTTTTCCAAAACGGTGGTGTGAAAAAGGCTTTTTCTCTTTAAAAAAA
AATAAATTTTTCCGTTTCGGCCCCTTGTATAAGCAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_m19.b1 MSMg01no397_m19.b1 CHROMAT_FILE:
MSMg01no397_m19.b1 PHD_FILE: MSMg01no397_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:21 2005
         (107 letters)



>mm_chrX_108011881_108012387
          Length = 507

 Score =  205 bits (106), Expect = 6e-58
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactacccaaagactctggcgccctattgggccagcgcctcccagttcagttcacctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccactacccaaagactctggcgccctattgggccagcgcctcccagttcagttcacctcc 260

                                                         
Query: 61  agttcgccgctcgctctcagggtgagaaacgctctcggtagggtgg 106
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcgccgctcgctctcagggtgagaaacgctctcggtagggtgg 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space:    49401
Effective search space used:    49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)