BAC Information

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BAC

Clone NameMSMg01-398P13
ChromosomeX (Build37)
Map Location 96,309,280 - 96,309,522
singlet/doubletsinglet
Overlap genenone
Upstream geneAr, LOC100042324, Ophn1, Yipf6, LOC100042932, Stard8, LOC436219
Downstream geneEfnb1, Pja1, LOC100042947, Pcna-ps1, EG620592, Eda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398P13.T7 (MSMg01no398_p13.b1)MSMg01-398P13.TJ (MSMg01no398_p13.g1)
ACCAG498949AG498950
length729750
length of high quality
(start - end)
54 (250 - 303)243 (76 - 318)
definitionCHROMAT_FILE: MSMg01no398_p13.b1 PHD_FILE: MSMg01no398_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:52 2005CHROMAT_FILE: MSMg01no398_p13.g1 PHD_FILE: MSMg01no398_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCAAAATTTGCGGCGCNAAAAGAANCACATTCGTCACCGTCCGNGGA
ANCCAAACTTACTGGCACCGGGCGNGNGGGNANNCANANGNACCNNNNNC
CGGCGGGCNAGGTTTCACCCGGGAGAAGGNAGGAAANAAGGGNNANNNGG
CNNNNNNNGNNNNAGAAGAAAAAGGGACGNAAGGACCAAAGAAAAAGAGC
CGANAAAACNCAANGGAAAAGAANNNNAAAGNNCACGGANAAGCTTCTTT
TTTTCTCTTTAAATTTTGAACTTATAGGCAAAATTATTCTGAGGCATACA
TTGGGGGCAAATGTTTTTTTTTTTGCACAGANGGGNCNCNNAACCAGAAC
AGACNAAGAGCCCCCCCACAGGGNCAGCGGGAGACCCCGAAGAAACAGAG
NAGACGGGNCGACCCCAGAAAANGGACANGNAGGGGGACNAACGAAGGGA
ACAGGAAGAGAANAGAGAAAACGAAAGCACGCGAAAACAGGAGACGAGAC
CCACGAAANGACCACAAGGACAAAGGNACAGACAGGCCAGCAGGAAGGAG
GCAGCAGCGGACAGAACGCCCAAAAGACACCCGCGCAACGAAGCAAGGCA
CACACAACCCAGGGACACCACCGACCCGCGGAAGGGGGACAGCATTTCTT
TTTTTCAGAGCCCCTGTGGAATATGGGACCGCATTTCTCCCTTGGAACCT
CGCAATGCTGATCTGCCGCTTGATGCTTT
NNCCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXTACAAAACATGAG
GTGAACTATAGAATTTCAGAGAACATCTTTCCTGAGGAGGGAGGAGAGCA
GTGGTGATGTGCAAACCTAGGACTGTCTCAAGCCCCAGATGTGCTCTACA
GAGCTCAGATTAGCAGAGGCCTAATAGAGAGTCTCCTACAGAGGTCAAAG
AATTCTGACATGGCTTTGATCTCTGAATACAATGGGAACATTTTGTGCTT
GTGAACTGGATGGAGTGAAAGCAATGGCAACTTGAGAACCCAAAACATCT
GCTCTGGAATGTGCTGTCCTTGGATCTGGACATTCAGGGGTGAAGTTTCT
GTTTCATTTGCCCCACCCGTGCTACAACTTCCAAACCATCCAAAACTCAG
GCACAGCCATCTTTAAACGACGAATTCTCATTTTATTTATTTCTTTAGGG
TGTGGGGGGGGCCTCGTGCAATGATAGAGGCTTGCTGAGGATACTAGAGG
CTGAGAAAGCCTTGGGAATGATGAATTGAATGGTATCAATCATCCTCTTT
GAGGCAGGTAAGAAGCTGACAATGATCCAGTGTGAGATATATTGGAAATG
ATACTAGGCTTAATTTTGGCTGGCACCTCTTTACTTCCTCATCCTTTTTT
TTTTTTTGTGTATCCCCCTCCTTTGCACGACGTTGCTTTCGGCCTCTCGG
TCCCCTTTTATTCTCCTTCAGCATTCCCGGACGTTTTTCTTCTTCTCTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_p13.g1 MSMg01no398_p13.g1 CHROMAT_FILE:
MSMg01no398_p13.g1 PHD_FILE: MSMg01no398_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:52 2005
         (243 letters)



>mm_chrX_96309080_96309722
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttcctgaggagggaggagagcagtggtgatgtgcaaacctaggactgtctcaagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 443 tctttcctgaggagggaggagagcagtggtgatgtgcaaacctaggagtgtctcaagccc 384

                                                                       
Query: 61  cagatgtgctctacagagctcagattagcagaggcctaatagagagtctcctacagaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagatgtgctctacagagctcagattagcagaggcctaatagagagtctcctacagaggt 324

                                                                       
Query: 121 caaagaattctgacatggctttgatctctgaatacaatgggaacattttgtgcttgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caaagaattctgacatggctttgatctctgaatacaatgggaacattttgtgcttgtgaa 264

                                                                       
Query: 181 ctggatggagtgaaagcaatggcaacttgagaacccaaaacatctgctctggaatgtgct 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctggattgagtgaaagcaatggcaacttgagaacccaaaacatctgctctggaatgtgct 204

              
Query: 241 gtc 243
           |||
Sbjct: 203 gtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)