BAC Information

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BAC

Clone NameMSMg01-399K18
ChromosomeX (Build37)
Map Location 103,087,237 - 103,087,383
singlet/doubletsinglet
Overlap geneAtrx
Upstream geneLOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik, LOC622202, LOC100043213, LOC668458, Cypt2, EG633570, Fgf16
Downstream gene2610529C04Rik, Cox7b, Atp7a, Tlr13, LOC671297, Pgk1, Taf9b, 5031408O05Rik, EG333563, LOC622494, Gm784, Cysltr1, EG331493, LOC668490, LOC100042772, LOC100043263, Zcchc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399K18.T7 (MSMg01no399_k18.b1)MSMg01-399K18.TJ (MSMg01no399_k18.g1)
ACCAG499479AG499480
length732730
length of high quality
(start - end)
559 (73 - 631)148 (73 - 220)
definitionCHROMAT_FILE: MSMg01no399_k18.b1 PHD_FILE: MSMg01no399_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:45 2005CHROMAT_FILE: MSMg01no399_k18.g1 PHD_FILE: MSMg01no399_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAGATCCGCGGA
ATTCTCACCTGTATGACTACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATGAATAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACTGGATTATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTCCCAACCAGCAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAACACCCAGAAGCTGGAAAAAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCTCAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACT
TATGATACCCCAGACATAAGATACAATCTGCTAATTGCATGAAACTCAAG
AAGAAGGAAGACCATAGTGTGGACACTTTGTG
AATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAAAGAATTCACATCCTTTTCTACATGT
TTGTTATGATTAATGGTTAGAACATCTGGACTTTTGCTTTTCTTTGTGAG
TCAAATTTGGTGAGTAATGTCTTCCATGTTTTAATTTTTCAACGACCCAA
ATTTATTACTTTGTTAGCTTGTCACACAGTGCATGATTCATAGAATCTAC
CTATAATCTTTTTATTTGTTGAGGGTTGGTAGTAGTAATCCTCCCTTTTA
CTTCTAGATCAGTCTATCCTATTTTTTATTCTCTTTTCTTTGAACCATTA
CTCTTTTTCTTCTTTATTTTTTTCCATTCCCTGTTTCATTAATTTCTGTT
CTGCTTGTCTCTTTGCCCCCGCTTTATCTTACACTTGTGTCTCCAGTATT
TTAGATCTAATATATGCGTATGAATATTTCTGCCTTACATGTATTTGTAC
CACTGGTCTGCTTAATCATTGCCCTTGGCCGTCCGATCTTTTATAACTGT
ACCCCTGTATGGTTGTGATCTGCCCCGTTGCTGTTGGTACTCACCCGAGT
TCTTCTATTTTAGTAGTGACCGTTTCTGTCCGTTAAACCCACTTCCCTGT
CTTCTGTTGTTCACATTTTATAATGCCACGATCTATAACCTTATTAATTT
TTCTTCCCTCTTATTATGTTACGCCCTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_k18.g1 MSMg01no399_k18.g1 CHROMAT_FILE:
MSMg01no399_k18.g1 PHD_FILE: MSMg01no399_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:45 2005
         (148 letters)



>mm_chrX_103087037_103087583
          Length = 547

 Score =  271 bits (140), Expect = 2e-77
 Identities = 146/148 (98%), Gaps = 1/148 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagaattcacatccttttctacatgtttgttatgattaatggttagaacatctggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 caaagaattcacatccttttctacatgtttgttatgattaatggttagaacatctggact 288

                                                                       
Query: 61  tttgcttttctttgtgagtcaaatttggtgagtaatgtcttccatgttttaatttttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tttgcttttctttgtgagtcaaatttggtgagtaatgtcttccatgttttaatttttcaa 228

                                       
Query: 121 cgacccaaatttattactttgttagctt 148
            ||||||||||||||| |||||||||||
Sbjct: 227 -gacccaaatttattagtttgttagctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 547
Length adjustment: 8
Effective length of query: 140
Effective length of database: 539
Effective search space:    75460
Effective search space used:    75460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)