BAC Information

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BAC

Clone NameMSMg01-399N08
ChromosomeX (Build37)
Map Location 60,404,242 - 60,404,509
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671741, 4933402E13Rik, 4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695, EG627420
Downstream geneLOC666729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399N08.T7 (MSMg01no399_n08.b1)MSMg01-399N08.TJ (MSMg01no399_n08.g1)
ACCAG499601AG499602
length754769
length of high quality
(start - end)
272 (52 - 323)268 (81 - 348)
definitionCHROMAT_FILE: MSMg01no399_n08.b1 PHD_FILE: MSMg01no399_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:57 2005CHROMAT_FILE: MSMg01no399_n08.g1 PHD_FILE: MSMg01no399_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGGTCCCTCACCTAAACATGATAAAAGCAATCTACAGC
AAACCACTAGCCAACATCAAAGTAAAAGGTGAGAAGCTGGAAGCATTCCC
ACTAAAATCAAGTACTAGACAAGGCTGCCCACTTTCTCCCTTCCTATTCA
ATATTGTACTTGAATTCTTAGCCTGAGCAAATCAACAACAAAAGGAGATC
AAGGGGTTACAAAGTGGAAAGGAAGAAGCCAAAATGTCACTTATTGCAGA
TAATATGATAGTATATATAACTGACTCTAGAAGTTCCACCAGATCTCTTT
AGCTCCTTGTATACTTTCTCTAGCTCCTACATGGGGGTCCTGTGATCCAT
CCAATAGTTGATTGTGAGCACCCACCCCTGTGTTTGCTAGGCCCTGTTCT
ATTTTCACACGAGACCGTTATATCAGGGTCCTTTCAGTAAACACTTGCTA
GTGTACGCAACGGTGCTATCGTTCTGTAGGTTAATCATCGTTATCGTATC
CCTGGATATGTCATCCTCTTGATGCTCCCCCCCTTTGTCCCATCTCTCCA
CCTCTGCCCTTGTATTCCTCTTCATGTCCTGACTGTCTCCCTCTCCCCTC
ATCCCCCTCCCTGTTCCCCACTTCTTTTTCTCCTCTTTTCCTTCTCTTCC
ATCCCGTTTTCGCAAATTCTTTTTTTTATCTTTCCTCCCATTATTAATTT
TTAG
NNCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGATACAATGTATATCAA
TAATATTTGTTAATCCTTCTGGAAGCCAAAAAAGAGATCGTCTTTGTCTA
TGCATATATCTGTGTGAATGAGTGGCAACCAGATGGTCCTACAAGATGAG
CATGCAAAGATTAGAAAGTGTGATTGCTTCTTGATAAACATTGAAGAGTG
AATTGTTTTTTTTTCTCCGCAAAAAGGAGGAGTAGTCCAAACAGAAACTT
TTTTATGTGACATGACAGTGTTATATACTCTATGTTTTGACTACCGTTAA
GTACAAGTAAAATAGATGTTTAAAAAATATCACTACATTCTGGCAGTTTT
ATCATATGGCTAGGCACACCCCCCCTTTACACTTTAGGTTCTAGCCCAAG
ACACCTTTTACGCTCACTGCTTGCTCTACTCACGAATGTTTTTCCCCGAC
CACTACTTGTATTATGCCTTAATGCCACTCCGCATTCTTGTATTATTCCA
TCACTTCATGTCACGCCCCCTTTTTTTTCTCCCTCCGCCTATCTTTTTTC
TCCCTTTCTTTTGCTCTCACTACTACTGTCTTCCTCTTTATTTTTCCTTA
TCTTCTCCCTCCTATACTGCTCTACCTATTCTCGCTCATCTTTTTTCTTC
TATTTCCTCCCCTCTCTCCTCCCTTTTCACCTCCTTCCTCTCGTGTCCTT
CTCTTTCCCTCCCCATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_n08.g1 MSMg01no399_n08.g1 CHROMAT_FILE:
MSMg01no399_n08.g1 PHD_FILE: MSMg01no399_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:57 2005
         (268 letters)



>mm_chrX_60404042_60404713
          Length = 672

 Score =  491 bits (254), Expect = e-143
 Identities = 263/268 (98%), Gaps = 4/268 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagatacaatgtatatcaataatatttgttaatccttctggaagccaaaaaagagatcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 atagatacaatgtatatcaataatatttgttaatccttctggaagccaaaaaagagaacg 260

                                                                       
Query: 61  tctttgtctatgcatatatctgtgtgaatgagtggcaaccagatggtcctacaagatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttgtctatgcatatatctgtgtgaatgagtggcaaccagatggtcctacaagatgag 320

                                                                       
Query: 121 catgcaaagattagaaagtgtgattgcttcttgataaacattgaagagtgaattgttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgcaaagattagaaagtgtgattgcttcttgataaacattgaagagtgaattgttttt 380

                                                                       
Query: 181 tttt----ctccgcaaaaaggaggagtagtccaaacagaaacttttttatgtgacatgac 236
           ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttttctccgcaaaaaggaggagtagtccaaacagaaacttttttatgtgacatgac 440

                                       
Query: 237 agtgttatatactctatgttttgactac 264
           ||||||||||||||||||||||||||||
Sbjct: 441 agtgttatatactctatgttttgactac 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 672
Length adjustment: 9
Effective length of query: 259
Effective length of database: 663
Effective search space:   171717
Effective search space used:   171717
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)