BAC Information

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BAC

Clone NameMSMg01-399O23
ChromosomeX (Build37)
Map Location 34,235,336 - 34,235,682
singlet/doubletsinglet
Overlap genenone
Upstream geneEG210457, Dock11, Il13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983
Downstream geneSlc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399O23.T7 (MSMg01no399_o23.b1)MSMg01-399O23.TJ (MSMg01no399_o23.g1)
ACCAG499678AG499679
length731781
length of high quality
(start - end)
352 (75 - 426)216 (74 - 289)
definitionCHROMAT_FILE: MSMg01no399_o23.b1 PHD_FILE: MSMg01no399_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:04 2005CHROMAT_FILE: MSMg01no399_o23.g1 PHD_FILE: MSMg01no399_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAGAATCCGC
GGAATTCAAGGCCATTTGCCGTATACATATGTCCCTGCTAAAAAATAAAA
TAAAATAAAGTAAGAAAAAATAAGAAAAAGAAAGGAAATGGCTTCTTTGG
CTCAGACTCAGAGGTTTCGCATGCAGTTCATCCTGTTGCTTTGTGCTGCT
GGCAATGCAGTGCATCATAGTGTGAGTATGTGGTAGAGTAGGATGCTGTC
CTTAGGACACCAAAGAAGTAAAGCGAGAGGGCCTTACGTCCCAAAATCTC
TTCCTTGGGCATCCCCCAGTGCTCTGATTTTCTTCCACTAGGCCTTACCT
CTTAAAGGTTCCATGACTTTCTAATAGTGCCATGGACTGGTGACCAAGGA
TTTGGAATTGAGAGCTTTGGACAACCCCCTAAAATCCAGTCTTCAGTATA
TTTCCTGAGATATGGGCACTGCTGCAGAGTTGTCAGTCTATAGCAGGAGT
TGCTGTTGCGCATCTATTTGCTCTTAATTGAAACTTTCCCCCTTAGAGGG
GTCATAAGACTCATATAGTGTGTCACGGAGAGGGACCAGTCAGTACCCAG
GATCTTGAGCTCTATCCCTACACCCTATGTAAAATAGCCGATTGCGCTCC
TATAACTTTAGCACCGTTAAGGCAGCGATTCACACACTCACCCCTGGTGC
TTACCGCCAAGTCAAACTTGTCCTACCTTGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGACATGGCAATATAAACCTGGCCAAA
AGCTCATGGCTGAGGGTGGATGTTATAAGCCCTAGAAGGAAATCTATTAT
TGTTCTTTTGATATTGGGCGTGGTGTCAACACGATCACAAAATATTGTAT
GATAGCATTTTCCATTTTAAAAAGTTGCTTGTTTTTTAAGAAGAAATACA
GTCAGGTGGTGATAGTACATGCCCTTAATCCCAGCATTCAGGGGGTGGTT
GGCAGAGGCAGGTGGATCTCTGTGAGATTGAGGCCTGTATGGCCTACAAG
GCAAGTTCCAGAATAGCTAGGACTATTACTCTGAGAAAAATCTATGGTGT
GTAGGTGGGGAGGTGTTATCCCCCCTTTTTCCTCTCCTTTTCCCCTTCTT
TTTCTTTTCCTACCCTTCCTCTCCCCCCTTCCTTTCTTAACATTTTTTTC
TCTTCCTTCCCCCTTTCTACTCTTCTCCTCTCCCTTTTCCCTTTTTTTCA
CTTATCACCCTCCCCCTCTCTTTTTCTTTTCCCTCCTCTTCACTCCTTTT
TTCAATCCCTCTTCTTTTCTTTTTTACTTCCCCCCTCTCTATTTTTTACC
CTTTTAATCTTCCTTCTCCTTTTCTTTTCCCTCCCCTTTTTTGTCCCCAC
CTTTTTCCTTTTCTTCCTTTATTANCCCTTTCTCCCCCCCACCTTCTTTT
CCCCCCTTTTTTTCCCTCCCCCTCCCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_o23.b1 MSMg01no399_o23.b1 CHROMAT_FILE:
MSMg01no399_o23.b1 PHD_FILE: MSMg01no399_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:04 2005
         (352 letters)



>mm_chrX_34235196_34235947
          Length = 752

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/347 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatatgtccctgctaaaaaataaaataaaataaagtaagaaaaaataagaaaaagaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acatatgtccctgctaaaaaataaaataaaataaagtaagaaaaaataagaaaaagaaag 428

                                                                       
Query: 61  gaaatggcttctttggctcagactcagaggtttcgcatgcagttcatcctgttgctttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaaatggcttctttggctcagactcagaggtttcgcatgcagttcatcctgttgctttgt 368

                                                                       
Query: 121 gctgctggcaatgcagtgcatcatagtgtgagtatgtggtagagtaggatgctgtcctta 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gctactggcaatgcagtgcatcatagtgtgagtatgtggtagagtaggatgctgtcctta 308

                                                                       
Query: 181 ggacaccaaagaagtaaagcgagagggccttacgtcccaaaatctcttccttgggcatcc 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 307 ggacaccaaagaagtaaagcgagagggccttaggtcccaaaatctcttccttgggcatcc 248

                                                                       
Query: 241 cccagtgctctgattttcttccactaggccttacctcttaaaggttccatgactttctaa 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cccagtgctctgactttcttccactaggccttacctcttaaaggttccatgactttctaa 188

                                                          
Query: 301 tagtgccatggactggtgaccaaggatttggaattgagagctttgga 347
           ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tagtgccgtggactggtgaccaaggatttggaattgagagctttgga 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)