BAC Information

Click to search

BAC

Clone NameMSMg01-400P17
ChromosomeX (Build37)
Map Location 38,750,352 - 38,750,551
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039769, LOC385344
Downstream geneGria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400P17.T7 (MSMg01no400_p17.b1)MSMg01-400P17.TJ (MSMg01no400_p17.g1)
ACCAG500475AG500476
length765786
length of high quality
(start - end)
539 (46 - 584)230 (77 - 306)
definitionCHROMAT_FILE: MSMg01no400_p17.b1 PHD_FILE: MSMg01no400_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:29 2005CHROMAT_FILE: MSMg01no400_p17.g1 PHD_FILE: MSMg01no400_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCG
GAATTCTCAACAGTTTCCTCTCAAATGGTTGAGAAACACTTAAAGAAATG
TTGAACACCCTTAGCTATCAGGGAAATGCAAATCAAACCACTTTGATATT
CTATCTTATATCTGTCAGAATGGGTAAGATAAAAAACACAAGTGACAGCT
CATGTTGGTGAAGATGCAGAGCAAGGAGAAACACCTTTTCACTGCTGGTG
GGAGTGCAAACTTGTACAACCACTTTGGAAATCAATATGAAGGTTCCTCA
GAAAATAACAAATTGATCTAACTCATTATCCAGCTATACTATTCCTAGGC
ATATACCCAAAGTGTGTTCCATCCTGGCGCAAAGACACTCAACTATGTAC
ATAGCTTTATTCATAACACTGAGAGAGAAGACTTAAACAGAGAATCAAGA
AGTAAAGATGTGACCATTGGCTCAAACAAGATTATGACCAGAGGTCTTAG
GATCCCGTGGCAGATCCTGTGTGGGTCCTTAGCCCAGAAACTTAGTATAG
CGAGGTATAAGGTACAATTTGCAAAACACATGAAACTGAAGAAGAACGAA
GGCCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAAACCATCACCC
ATGGATAGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAATGATCGAC
CATCTAGAGACTGCCCTATCCAGGGATCCATCCCATAATTAACCTCCCAA
CGAGGACCCCTTTGN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGATCTGGGATTGTTCCAAGAT
CAGAAATACGGTCCAAATTGGTAGTCAAACCATGACATTAGAAACAACTG
AATTTTTATGGCTAGTTCTTGAATTTCTTTATCTAGGTGTGGTTTTTTTT
TGTTTGCTTTCTTGCTTTCTTGCTTTCTTGCTTTCTTGCTTTCTCTCTTT
CTCTCTCTTTCTCTCTCTGTCTTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCACCTCCCACCCACCCNCCTTTTTTTTTTTTCACNCACNCNCAACAAA
CCCACACAACCATCTTTCTTTCCTTCTTTCTCACCTTCCTCCCCCCTTCC
TTCCTTTCTTTCTTTCCCCCCCCCTTTTCTTTCTTTCTTCATTCATTCGG
TTTTCTTCATAACTATACATTATTCACACTCCTCTATACTTCTCCCCTCC
ATACATATCACTTTTCCTCTCCTTCCCCACCATTATCTCATTTCTCTTTC
TCACACCCCTTACCTTAACTTACTCCTCTCTCCTAACCTACTAACAATTT
TACCCCTCCTTAAAACCCTCTTTCAAAATTACTTCTATTCCAACTCTATA
AATTCAAACCCATATTCCCTTTTTTATCTTTTATCCCTCTTTAACCCAAC
ATATCTCTCCTCTTTCTTCTCCCCTTATCATCTTATCCAATCTATTTTTT
ACCCCTCCATCAAATTCATATTACACATAATCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_p17.g1 MSMg01no400_p17.g1 CHROMAT_FILE:
MSMg01no400_p17.g1 PHD_FILE: MSMg01no400_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:29 2005
         (230 letters)



>mm_chrX_38750236_38750865
          Length = 630

 Score =  290 bits (150), Expect = 4e-83
 Identities = 196/228 (85%), Gaps = 29/228 (12%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgatctgggattgttccaagatcagaaatacggtccaaattggtagtcaaaccatgac 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 316 catgatctgggattgttccaagatcagaaatactgtccaaattggtagtcaaaccatgac 257

                                                                       
Query: 61  attagaaacaactgaatttttatggctagttcttgaatttctttatctaggtgtgg-ttt 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 256 gttagaaacaactgaatttttatggctagttcttgaatttctttatctaggtgtggtttt 197

                                                                       
Query: 120 ttttttgtttgctttcttgctttcttgctttcttgctttcttgctttctctctttctctc 179
           ||||||||||||||||||||||||                      ||||||  ||||| 
Sbjct: 196 ttttttgtttgctttcttgctttc----------------------tctctc--tctctt 161

                                                           
Query: 180 tctttctctctctgtctttccctccctccctccctccctccctccctc 227
           ||||||||||    ||||||||||||||||||||||||||||||||||
Sbjct: 160 tctttctctc----tctttccctccctccctccctccctccctccctc 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)