BAC Information

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BAC

Clone NameMSMg01-401B05
ChromosomeX (Build37)
Map Location 136,246,647 - 136,247,143
singlet/doubletsinglet
Overlap geneTbc1d8b
Upstream geneIl1rapl2, Nrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432
Downstream geneRipply1, Cldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446, EG245643, LOC666424, Prps1, Tsc22d3, Mid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401B05.T7 (MSMg01no401_b05.b1)MSMg01-401B05.TJ (MSMg01no401_b05.g1)
ACCAG500546AG500547
length744725
length of high quality
(start - end)
581 (57 - 637)495 (87 - 581)
definitionCHROMAT_FILE: MSMg01no401_b05.b1 PHD_FILE: MSMg01no401_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:36 2005CHROMAT_FILE: MSMg01no401_b05.g1 PHD_FILE: MSMg01no401_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGCGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCNGGAATTCTCTCTTTCGAAGACATACATATTGGTTGAAAGGAATAG
ACAAAGACAATACAAAACAAAAATTAAACCCAAAGTCACCCATCATCAGG
AAATGCAAATTAAAGACACAATGTAGTATCCCCTTATCCCCAGCAAGAAT
GTCAATTAGCAAAAAGACAAAAGACAGAGCAAGCATGTCCCTTATGAGAA
TGGGAACAATAGGGAAGCCTGCCAAACTGTTGGGAGGACTAGAAAACCAC
GTGATGGGTCCTCAAAACACTAAACATATACTTAGCATATGATTGAATAA
TTCCACTTCTGGGTATGTACCCAAAAAACTCAAATCAGAATCTTTAGCGA
CATCATCATGCTCATATTCATTGCTGTATTATTCCCAATAGCTAAAATTG
TGGAAGCAGTCCAAGTTTTCATAGATGAATGAGTGGAATTTTAAATATGT
GTATAGTGTAATATATAGTTCAACAATTAAAGACAAGGAAACCAAACAGA
GAAACCTTGTCTTGAAAAAAACAACAACAAAAGAAAGCAAAAACAACCTT
GAGGACACTATATTAAGTGAAATAAGTTAGTTACAAAAAAGGTAAGTAAG
TATTAGATTACTCTGAAATAAAGTACTCAGACTAGTCAAAAATCACATCT
ACAGAAAGTAGAAGCCAATGTCTAGGGATTGTAAATATACTGTN
TTTTCCTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGAAGAGCAGAC
CACTTAATGGTTAATTTTTCTGCTTTCTATCTTATATAGGTTAAACACTA
TTGGTGTATTTGTACTTTAGAATTCATCCCTTGAGCCCCTCCCTCCCTTT
TTTTCTTTTCTTTTTTTTTTTTTTCCACAGAGGTTTGGAATATCGAGCCC
ACAGTGAGCAATTCAAAGCCTTTTTTAGGCTACCCAAAGAAGAGACATTG
AAAGAAGTACATGAGTGTTTCTTATGTTTATCATTCAGCCACTTCAGTAG
TCACGGAAAAATGTGCATTTCAGAAAACTATATTTGCTTTGCTAGCCAGG
ATGGGAATCTATGCAGTGTAATCATTCCATTACGAGAGGTAATATCAATT
TGGGTACATATAAGTTTTTAATTTCTAGAACACCCTCTAATTCTGTGAAT
TAGTGAAAAACTCAGGAAATGTATCGTTTTAGCAATTTAAATAATCATTT
GAGTACAAAATTACTCTTCAAGTTAAAAATAGCAGCTTATGGAATATTTT
AAAATTCCTTTTATAAAAGCTTTGCCAAAAGTGTGGAATTTTAAAAAGCA
TATAAAGATTTAGGGTAGTAGTTCCTCAACCTTCCTAATGCTGTGACCCT
TTAAAATTAGTTTCTCATGTTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_b05.g1 MSMg01no401_b05.g1 CHROMAT_FILE:
MSMg01no401_b05.g1 PHD_FILE: MSMg01no401_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:37 2005
         (495 letters)



>mm_chrX_136246449_136247343
          Length = 895

 Score =  926 bits (479), Expect = 0.0
 Identities = 492/497 (98%), Gaps = 2/497 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaagagcagaccacttaatggttaatttttctgctttctatcttatataggttaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attgaagagcagaccacttaatggttaatttttctgctttctatcttatataggttaaac 258

                                                                       
Query: 61  actattggtgtatttgtactttagaattcatcccttgagcccctccctccctttttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 actattggtgtatttgtactttagaattcatcccttgagcccctccctccctttttttct 318

                                                                       
Query: 121 tttcttt--tttttttttttccacagaggtttggaatatcgagcccacagtgagcaattc 178
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttcttttctttttttttttccacagaggtttggaatatcgagcccacagtgagcaattc 378

                                                                       
Query: 179 aaagccttttttaggctacccaaagaagagacattgaaagaagtacatgagtgtttctta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaagccttttttaggctacccaaagaagagacattgaaagaagtacatgagtgtttctta 438

                                                                       
Query: 239 tgtttatcattcagccacttcagtagtcacggaaaaatgtgcatttcagaaaactatatt 298
           ||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgggtaccattcagccacttcagtagtcacggaaaaatgtgcatttcagaaaactatatt 498

                                                                       
Query: 299 tgctttgctagccaggatgggaatctatgcagtgtaatcattccattacgagaggtaata 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgctttgctagccaggatgggaatctatgcagtgtaatcattccattacgagaggtaata 558

                                                                       
Query: 359 tcaatttgggtacatataagtttttaatttctagaacaccctctaattctgtgaattagt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcaatttgggtacatataagtttttaatttctagaacaccctctaattctgtgaattagt 618

                                                                       
Query: 419 gaaaaactcaggaaatgtatcgttttagcaatttaaataatcatttgagtacaaaattac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaaaaactcaggaaatgtatcgttttagcaatttaaataatcatttgagtacaaaattac 678

                            
Query: 479 tcttcaagttaaaaata 495
           |||||||||||||||||
Sbjct: 679 tcttcaagttaaaaata 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)