Query= MSMg01no401_g07.b1 MSMg01no401_g07.b1 CHROMAT_FILE:
MSMg01no401_g07.b1 PHD_FILE: MSMg01no401_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:00 2005
(490 letters)
>mm_chrX_48067438_48068328
Length = 891
Score = 830 bits (429), Expect = 0.0
Identities = 476/493 (96%), Gaps = 5/493 (1%)
Strand = Plus / Plus
Query: 1 atgctttttaattttctgtgacctcactgttcagtgattaaggtta-ttttttttttgaa 59
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 atgctttttaattttctgtgacctcactgttcagtgattaaggttatttttttttttgaa 260
Query: 60 tgactgtggaactttcctgaaagcctgtgactctggctattagttgaaatattttctcta 119
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 261 tgactgtggaactttcctgaaagcctgtgcctctggctattagtcgaaatattttctcta 320
Query: 120 ggctttcctctaacacttcctggagttacaggtttgatgttaaggtctatgagagccaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctttcctctaacacttcctggagttacaggtttgatgttaaggtctatgagagccaag 380
Query: 180 ttgcctttgtttttcaggttccttgtggttttgcattgagattcatgcgtttgggttcat 239
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 381 ttgcctttgtttttcaggttccttgtggttttacattgagattcatgtgtttgggttcat 440
Query: 240 ccttatttttctt--ttgggtatgtttgcagtgttaaaatgggactggcttgttatattg 297
||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 cctta--tttcttcagtgggtatgtttgcagtgttaaaacgggactggcttgttatattg 498
Query: 298 ctgaggtgccatgttttttgtctgctggactatggtctatctcagtagaccacatgcttg 357
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctgaggtgctatgttttttgtctgctggactatggtctatctcagtagaccacatgcttg 558
Query: 358 ggacaccatgtcctatgactttaagagttgaatataaaacacaatcactaccaatgtgta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 559 ggacaccatgtcctatgactttaagagttgaatataaaacacaatcactaccattgtgca 618
Query: 418 ggctcactatgaaaatacaatataagcgaatgaaaaacaactgaccttcaatcccatcac 477
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct: 619 ggctcactatgaaaatacaataaaagcggacgaaaaacaactgaccttcaatcccatcac 678
Query: 478 atttaggaagtaa 490
|||||||||||||
Sbjct: 679 atttaggaagtaa 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_g07.g1 MSMg01no401_g07.g1 CHROMAT_FILE:
MSMg01no401_g07.g1 PHD_FILE: MSMg01no401_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:00 2005
(515 letters)
>mm_chrX_48242669_48243583
Length = 915
Score = 965 bits (499), Expect = 0.0
Identities = 511/519 (98%), Gaps = 8/519 (1%)
Strand = Plus / Minus
Query: 1 aaatctctagcatccatgttcgggtcaggtggaactgagcccatagaacttcagcactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 aaatctctagcatccatgttcgggtcaggtggaactgagcccatagaacttcagcactgg 850
Query: 61 agggcagagaagaatattctttctgggcaatcactaaacagggcaggctgcaggttcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 agggcagagaagaatattctttctgggcaatcactaaacagggcaggctgcaggttcaat 790
Query: 121 gagaggccctgcctcaaaaaataagggggagagaaatagaggaacaatcccaatgttgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gagaggccctgcctcaaaaaataagggggagagaaatagaggaacaatcccaatgttgac 730
Query: 181 gtctttccttcccaggcccatgtgagagataactccccacgtttctttctctcctgcacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gtctttccttcccaggcccatgtgagagataactccccacgtttctttctctcctgcacc 670
Query: 241 ccca----tttttgtctttctctctctgtcaaagaagacgtttaaatttggcaagaaaca 296
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cccagccc----tgtctttctctctctgtcaaagaagacgtttaaatttggcaagaaaca 614
Query: 297 aatctgttttcaaacatacaactatccgaatgtgattttgcagggaaaatgtaggaaaca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aatctgttttcaaacatacaactatccgaatgtgattttgcagggaaaatgtaggaaaca 554
Query: 357 gctgcatcgaagtaactttattacatcagaaactaccatctaaaatgccaaccgaaaatg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gctgcatcgaagtaactttattacatcagaaactaccatctaaaatgccaaccgaaaatg 494
Query: 417 acacttcaaacttacttttgaaatttttcgattagtttcttcaccatcttatctgtgatg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acacttcaaacttacttttgaaatttttcgattagtttcttcaccatcttatctgtgatg 434
Query: 477 ccaggacaggcggtttcagccacagcaatacttttctca 515
|||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccaggacaggcggtttcagccacagcaatacttttctca 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
