BAC Information

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BAC

Clone NameMSMg01-401J05
ChromosomeX (Build37)
Map Location 63,356,603 - 63,357,282
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671840
Downstream geneSlitrk2, LOC666824, LOC627734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401J05.T7 (MSMg01no401_j05.b1)MSMg01-401J05.TJ (MSMg01no401_j05.g1)
ACCAG500928AG500929
length744746
length of high quality
(start - end)
678 (50 - 727)309 (327 - 635)
definitionCHROMAT_FILE: MSMg01no401_j05.b1 PHD_FILE: MSMg01no401_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:14 2005CHROMAT_FILE: MSMg01no401_j05.g1 PHD_FILE: MSMg01no401_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATGCTTACTTTGACCTCTAATAAGAATACTAATTTGCCTT
CTTTTGGAATGCTTTGACTTTCAAATAAGCACACACACACACACACACAC
ACACACACACACACACACACACAAACAGAGAGAGAGAGACAGACAGACAG
ACAGACAGACAGACAGACAGAAATACACACAGAGACACACACAAATGCAC
ACGTGCATACACACACATTGCTCTAATTGGACTTCCTACTTAGTGTATGC
TTCTTTTGTTAAACATTGTTTATATTTTTATGTTTGATAATTTTTTATCC
ATTGAAATAAATAGAGCAGTAGATGAGAAAGATTAAAAAAATATGAATGC
CAAAGTGAATTCATTCTTAGTATGTCATTAGATAAGTCAACTTGGTAGGT
TCTTCCACTTAACCTCAACTAGAATCTTATCTTCACAGCTATTGTTGAGG
CTTAGCCAACAGCTATACTTTGGTGAGAAAATTCATCAGATATCGAAGGT
AAATTGGAAGAAGGAATATAGTAATATTTTAAGTCAATCATACTACATTT
TTATTGCTAATGATGTAGTTATATAGTGTTCTCTGAATAAACGTTTAGTT
CCATAGAATAAGTCTCAATTTAGAATCATTAGTAACTTGCACTTCTCCCT
CCTATAAATAGCCATCCCATATTGATACCACAAATGTTGGCTAN
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCAG
TGCAGTAGCTGGATATAAAATTAACTCAAACAAATCAGTGGCCTTTCTCT
ACACAAAGGATAAACAGGCTGAGAAAGAATTTAGGGAAACAACACCCTTC
TCAAGAGTCACAAATAATACAAAATACCTGGGTGTGACTCTAACTAAGGA
ATTGAAAGATCTGTATAATAAAAACTTCAAGTTTCTGAAGAAATAAATTG
CAGAAGATCTTAGAAGATGTATATTATATCCCATGCTCATGGATTGGCAG
GATTAATATAGTCAAAATGGCTATCATGCCAAAAGCAGTCTACAGAGTCA
ATGCAAACCCCATCAAAATTCCAACTCAATTCTTTACAGAGTTAGAAAGG
GCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAC
TATTCACAACAATAAAAGTACCTCTGGTGAAATCACCATGGTTGACCTCA
AGCTGTACAACAGAGAAATTATGATTAAAAATGCATGGTAATGTTACAGC
AAGAGACATGCAGGTCAATGGAATAGAACTGAAGACCCAGAAATTAACCC
ACACACCTCTGGTCACTTGATCTTTGACAAGGGATCTAAAACCATCTAGT
GGAAAAATACAACTTTTTCAACAATGGTGCTAGCACAGCTGGCGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_j05.b1 MSMg01no401_j05.b1 CHROMAT_FILE:
MSMg01no401_j05.b1 PHD_FILE: MSMg01no401_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:14 2005
         (678 letters)



>mm_chrX_63356405_63357482
          Length = 1078

 Score = 1187 bits (614), Expect = 0.0
 Identities = 662/684 (96%), Gaps = 14/684 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgcttactttgacctctaataagaatactaatttgccttcttttggaatgct 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattccatgcacactttgacctctaataagaatactaatttgccttcttttggaatgct 258

                                                                       
Query: 65  ttgactttcaaataagcacacacacacacacacacacacacacacacacacacacacaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttgactttcaaataagcacacacacacacacacacacacacacacacacacacacacaca 318

                                                                       
Query: 125 --aacagagagagagagacagacagacagacag----acagacagacagacagaaataca 178
             |||||||||||| ||||||||||||||||||    |||||||||||||||||||||||
Sbjct: 319 caaacagagagagacagacagacagacagacaggcagacagacagacagacagaaataca 378

                                                                       
Query: 179 cacagagacacacacaaatgcacacgtgcatacacacacattgctctaattggacttcct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacagagacacacacaaatgcacacgtgcatacacacacattgctctaattggacttcct 438

                                                                       
Query: 239 acttagtgtatgcttcttttgttaaacattgttta-t---atttttatgtttgataattt 294
           ||||||||||||||||||||||||||||||||||| |   ||    ||||||||||||||
Sbjct: 439 acttagtgtatgcttcttttgttaaacattgtttaatcaaat----atgtttgataattt 494

                                                                       
Query: 295 tttatccattgaaataaatagagcagtagatgagaaagattaaaaaaatatgaatgccaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttatccattgaaataaatagagcagtagatgagaaagattaaaaaaatatgaatgccaa 554

                                                                       
Query: 355 agtgaattcattcttagtatgtcattagataagtcaacttggtaggttcttccacttaac 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agtgaattcattcttagtatgtcattagataagtcaacttggtaggttcttccacttaac 614

                                                                       
Query: 415 ctcaactagaatcttatcttcacagctattgttgaggcttagccaacagctatactttgg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ctcaactagaatcttatcttcacagctattgttgaggcttagccaacagctatactttgg 674

                                                                       
Query: 475 tgagaaaattcatcagatatcgaaggtaaattggaagaaggaatatagtaatattttaag 534
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 675 tgagaaaattcatcagatatcgaaggtaaaccggaagaaggaatatagtaatattttaag 734

                                                                       
Query: 535 tcaatcatactacatttttattgctaatgatgtagttatatagtgttctctgaataaacg 594
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 735 tcaatcatactaaatttttattgctaatgatgtagttatatagtgttctctgaataaatg 794

                                                                       
Query: 595 tttagttccatagaataagtctcaatttagaatcattagtaacttgcacttctccctcct 654
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tttagttccatagaaaaagtctcaatttagaatcattagtaacttgcacttctccctcct 854

                                   
Query: 655 ataaatagccatcccatattgata 678
           ||||||||||||||||||||||||
Sbjct: 855 ataaatagccatcccatattgata 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)