BAC Information

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BAC

Clone NameMSMg01-401N02
ChromosomeX (Build37)
Map Location 125,770,155 - 125,770,489
singlet/doubletsinglet
Overlap genenone
Upstream geneMdm4-ps, EG237030, LOC100040538, LOC100040550
Downstream geneLOC100040562, LOC100040570, LOC669120, Diap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401N02.T7 (MSMg01no401_n02.b1)MSMg01-401N02.TJ (MSMg01no401_n02.g1)
ACCAG501112AG501113
length746742
length of high quality
(start - end)
349 (330 - 678)568 (80 - 647)
definitionCHROMAT_FILE: MSMg01no401_n02.b1 PHD_FILE: MSMg01no401_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:32 2005CHROMAT_FILE: MSMg01no401_n02.g1 PHD_FILE: MSMg01no401_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTGATTTCCCACAGACAGACAGCTTTGCTATTTTAGAACT
TCCCAGATATGCACAAATACTGGGAGCAGAATCTCCTGCCTGGAAATGCA
TGCCCCATCAATTATTATCTGTGTCTCCTCCTGCCCTAAACTTAGTGGCT
TGTATCTGCTAGATACCACCCCCTGCCCCACCTCACCCCTACCTCCTTGG
CTATCTTCCAGTAGTGGAGGCTGCTGGTTCTAGTTTCCCCCAAGATCTGA
CATGACTGCTGTGTGGTGCTCTTTTTTAAGCCTGGCTGAAAAGCTACCCT
CTCCATGTTTCTCTTTCCTCCTGGGACCTAGAAGTCCCACCTGTCCCTTC
CACTCAGCAATTGGTTCCCAGTGTTCTTTATAAACAAGTCAAGAACCAAT
TAGGGAACCATACCTTAGTATCATCACCTCTCCCTACAGTTGGGATAAAA
AAGGAAATGGTAGGGAAAGAACAAAAAATAATTTTATTTAAAACAGTACC
CCGATGAAAATTATAAAATGGATGCTATATATTCCTGATGAACAGTATTA
TGTGCTTACTTTTTGGAATGACATTTTTTTGTTCTACATTCTTCTACCTT
TCTTTTCTCCCTTCCCATGTGTGTGTACTTGGGCGTGCACATGCTGCATT
TCAGTAGTGCATATGTTTTTACTTTATAACCATCCTCCTTTTCTAT
NCCCCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAACAAATAGGTAAACC
TGTATATATTTATGTAAATGTTGCTTTTATTTCCTAAGATTATGGGATGA
GATGAGAGTGCTAGATTAACAAATACATGGCTTGGGTTGAGCCAAAAGCA
TTTCAATCTCTGTTCTATTCCTAGGCTTAGGCCTGGGAACTTCTAGCCTC
TATACAATCTAGTCTTCTGTAAGCCCAGAACCTAAGGGTTTCAGCTTCCA
ACTGTCATCTGCTAATTGAAGTCTATAATGTTTCAGCCTCTGAGACTTAC
TACTGAATAAACTCATACTTTCTAGCTATTTCTGAATTTTGACTGGTTGG
CTAAAGCTGACTGATTCAAATTGGCTTCACTTGGCTTCAGACTTAATTTC
TCTGCTTAGGAAGCCCTCTAAACTCCACAAACTGAAATGAGCACAACTGC
ACTCAATTGAACTGCATCAAATTGAACTGCTCCAAAGAGAATTGCTCTGA
ACTGAATTCAGTTCTCTGACTGTTCTTTTTGTTTTTTTAATTAGGTATTT
ATTTCATTTACATTTCCAATGCTATCCTAAAAGTCCCCCACACGCTCCCC
CACCCACTCCCCTACCCACCCATTCTTACTTCTTGGCTCTGGTATTCCCC
TGTACTGAGGTACACAAAGTTGGTTGATCTCGGTCCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_n02.b1 MSMg01no401_n02.b1 CHROMAT_FILE:
MSMg01no401_n02.b1 PHD_FILE: MSMg01no401_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:32 2005
         (349 letters)



>mm_chrX_125769741_125770489
          Length = 749

 Score =  640 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 15  ctaccctctccatgtttctctttcctcctgggacctagaagtcccacctgtcccttccac 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ctaccctctccatgtttctctttcctcctgggacctagaagtcccacctgtcccttccac 690

                                                                       
Query: 75  tcagcaattggttcccagtgttctttataaacaagtcaagaaccaattagggaaccatac 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tcagcaattggttcccagtgttctttataaacaagtcaagaaccaattagggaaccatac 630

                                                                       
Query: 135 cttagtatcatcacctctccctacagttgggataaaaaaggaaatggtagggaaagaaca 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cttagtatcatcacctctccctacagttgggataaaaaaggaaatggtagggaaagaaca 570

                                                                       
Query: 195 aaaaataattttatttaaaacagtaccccgatgaaaattataaaatggatgctatatatt 254
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaaaataattttacttaaaacagtaccccgatgaaaattataaaatggatgctatatatt 510

                                                                       
Query: 255 cctgatgaacagtattatgtgcttactttttggaatgacatttttttgttctacattctt 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cctgatgaacagtattatgtgcttactttttggaatgacatttttttgttctacattctt 450

                                              
Query: 315 ctacctttcttttctcccttcccatgtgtgtgtac 349
           |||||||||||||||||||||||||||||||||||
Sbjct: 449 ctacctttcttttctcccttcccatgtgtgtgtac 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)