BAC Information

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BAC

Clone NameMSMg01-402L20
ChromosomeX (Build37)
Map Location 35,104,524 - 35,104,895
singlet/doubletsinglet
Overlap genenone
Upstream genePgrmc1, B230333C21Rik, LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311
Downstream geneRhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402L20.T7 (MSMg01no402_l20.b1)MSMg01-402L20.TJ (MSMg01no402_l20.g1)
ACCAG501816AG501817
length749759
length of high quality
(start - end)
249 (72 - 320)395 (80 - 474)
definitionCHROMAT_FILE: MSMg01no402_l20.b1 PHD_FILE: MSMg01no402_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:44 2005CHROMAT_FILE: MSMg01no402_l20.g1 PHD_FILE: MSMg01no402_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCCTATATTTCGCGGGCGCTATACGACTCACTATTTCCAGAGGATCC
GCGGAATTCATTCCTTGCCCACTACTTATAAAAGACCTGCACAGAAAAAG
GCTAGCCAAAATGCTACTGCCAATAGGAGAAAGCCTTGGGAATGTCCATT
CAAATGGTAATAGTGACCATTGACTTCAGCTGGGGGAAGGAGAGTCAGTT
TGCTGCCATGTTAACATCATGAGGATGTTATGCATGCTGCAGTAATGGTC
TTACATCAGTATACACACAGGCAGGAAAAAGGAGACCAAGTAGGTTTTAA
AAACATAAAATAGGAAGGGAGAATTATAGAGGAAAAGGGCAGGGGTAATT
TTAGGAAAGAGAATGTGAGGGTGGATTTGAGCTGCTGCATTATAAGCAAG
GATGCAATGCTCAGACAGTAAAATTAGACAAAATGTAAATCAATTCGGCC
GCTCACTGCATGACAGGATAGCAGATGAATGAGAATTGTTTACACGAAAT
TAATGCCCAATTTTTTTTTTTGACACATAAACTCTCGTCCCACGAAATTA
CCTTATTGATACCCTCCCTTGTTACCTAAAATTTTCTGATTATACTCTCT
ACCTTAAAGATGTTCCTGTAAAAGCCGATCACCCTGCCCTCTCTCTGTTA
TCGCCTTTTCTTACCCGGACCCCGTGGTCATTTGTCCCCTCTCATGCTCT
GCTCCTCTCTAGTGCTTCCCAGTCTAACTCATCTGTTGTGCTTTTTTCT
CCCCTCCGATATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGGACTTTACTGATCAGA
TAGGCTATCCAAACCCTCTGAACCAACTGCCATGTTCTGAGCCCTCACAT
GTAACAAAAGAGGTGCAAGAGAGACACCAGCAGCTTAGGAGAGCAGAGCT
AGCGCCAGAGTGGAGTTATTTCCTATGACCCTAAAACCCAAACCAACTAG
AGAGGCAGAAGATTGAAACACCTAGTATACCAAGAAGCTTTTATGACAAA
ACTGTACATTCACACAATCTTTGATTCAAACATGATTACATTTAAAAAAT
CAAATCAGGCCCATTGCTTAGTGTTTGACATGAAAATGAGAAAACAAAAG
CAATGGAGCTGAGAAGATGAAATAGATATTGTTTGTTTGTTTGTTTGTTT
GTTTGCTTGTTTGATTTTGGTTCTCTACCTATCCTACCCCCACCTGATAC
TCCCTCCTGCTTCCCTATCGATTTTTATTCTCTGATCTCTCCTGCCCTTA
TCCCCTGTTTGCTTTTTATTACTGATTTATCCCTGTCCACTCCCAGGCAC
TTTATTCCCCTCGTCTTACATTCTCCTCCCTTTTTCCTCGTTTTTTCCCC
CCCCCTTTTTTTCTTTTTATTTCCCTCTCAGCTGGCGGTCGTCGTTAACT
CCTACTTTTTTCCCATATTTCTCTCTCTCTCCTCTCCCCCCTCACCCCCT
CGCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_l20.g1 MSMg01no402_l20.g1 CHROMAT_FILE:
MSMg01no402_l20.g1 PHD_FILE: MSMg01no402_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:44 2005
         (395 letters)



>mm_chrX_35104347_35105141
          Length = 795

 Score =  696 bits (360), Expect = 0.0
 Identities = 369/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaggactttactgatcagataggctatccaaaccctctgaaccaactgccatgttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cttaggactttactgatcagataggctatccaaaccctctgaaccaactgccatgttctg 490

                                                                       
Query: 61  agccctcacatgtaacaaaagaggtgcaagagagacaccagcagcttaggagagcagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agccctcacatgtaacaaaagaggtgcaagagagacaccagcagcttaggagagcagagc 430

                                                                       
Query: 121 tagcgccagagtggagttatttcctatgaccctaaaacccaaaccaactagagaggcaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 429 tagcgccagagtggagttatttcctatgaccctaaaacccaaaccaactagagaggcaaa 370

                                                                       
Query: 181 agattgaaacacctagtataccaagaagcttttatgacaaaactgtacattcacacaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agattgaaacacctagtataccaagaagcttttatgacaaaactgtacattcacacaatc 310

                                                                       
Query: 241 tttgattcaaacatgattacatttaaaaaatcaaatcaggcccattgcttagtgtttgac 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttgaaacaaacatgattacatttaaaaaatcaaatcaggcccattgcttagtgtttgac 250

                                                                       
Query: 301 atgaaaatgagaaaacaaaagcaatggagctgagaagatgaaatagatattgtttgtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atgaaaatgagaaaacaaaagcaatggagctgagaagatgaaatagatattgtttgtttg 190

                       
Query: 361 tttgtttgtttg 372
           ||||||||||||
Sbjct: 189 tttgtttgtttg 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)