BAC Information

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BAC

Clone NameMSMg01-403O05
ChromosomeX (Build37)
Map Location 53,471,922 - 53,472,045
singlet/doubletsinglet
Overlap genenone
Upstream gene4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254
Downstream geneLOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403O05.T7 (MSMg01no403_o05.b1)MSMg01-403O05.TJ (MSMg01no403_o05.g1)
ACCAG502692AG502693
length769759
length of high quality
(start - end)
123 (124 - 246)191 (73 - 263)
definitionCHROMAT_FILE: MSMg01no403_o05.b1 PHD_FILE: MSMg01no403_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:20 2005CHROMAT_FILE: MSMg01no403_o05.g1 PHD_FILE: MSMg01no403_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGAATCCGCGGAATTCCA
GTCATATTCTACCCAAAAGAAAATGGCCAGGGCCTGTGAACCAGCATACA
TATTGGGGGGGACAATCACCGGTGTTTAGATGGGAAATTTGCCTTAAAAG
CAAGTAGATTTTCAGCATGCATACCAATTGATGAGGCCAGAAAAAGCCTT
CCATGGCTCTGCTTCAATTGAGCCCTTTCCTCTGAAGTAAAGTAACCAAT
AATAGATTCTGGGAACCATCCCAGGTGGAAGAGTGAGGACGGGGGACAGG
TGACAGGAGCAGGCTTTTTTTTCTGGGCTTATCAGAAAAAGGGGTATAAC
AGTTAGACAGATCACCAGCAGAAAAAGGACCATAGATCAGGGAATGGCCG
CATCACATTCTAAGCCACTGCACTTCCAAGGAAGTAGTGCCTAGTGACAA
CGCGGAAATACCTCTGGCTTGATTCCTGATCTCCTCCAGACAACGACGTT
CTCTTATCCATGAAGTCTAGGTCACGCGACCGGAATAAAAGAATCTGTTT
TAAACTGCTGTTATTCCCTCCCCTACTCCCACTGATTATCCTGTTCCGTT
TGTTATACTTCTATCTTTTTTTCTCCCCTTTATCTTGTTATACCATTTTT
TTCCCGTCTTCTTATTTCTCTCCCTTATCATTCTTCTCCTCATCCTTCTC
CCCTCCTTTACACCCCCTTTTATTCCCTCCCTTCTTCCTCTTTTTCCTAT
CCCCCACTTCTTCTCCCTT
TGATGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTCTCCCCCCTCTCTCTTTCTCTGT
GTGTGTGTTAAGAAATAATACAGAATTTTAAAAGGACCAGAGGAACCTCT
AAGATGCCATTGAGTTCGCTTTCTGTTGCCCATCTACTGATAGGCACCGA
GCCAACCCTTATGAGTAGTTAGTTTCCCTTCTGAGACTCCCTGAAAGAAA
ACTAAATTTTCATTTGCAAGTGATTATCAATTGGAGATAGCTTCTGGGTT
AGGGATGGGGACATATTTTTTTGTATTCACTTCTTCTCTCAGTGCTGGGA
CCCTAACTGGTGTAGGTCTGTGCATGTCCTGTGTATGCTGCCTCCGTCTC
TGAATTATGTGAACCTTTGTGCTCTTGCCTCACTGAGCCTTGCCCTTTTG
GTACTCTTCCATCTCTTTTTTCTTTTCTACTTTTTCCTCCTCTCCCTTTT
CACTCCGCCCTTGATTTTTACTTCTTTCATCTGTTGTTCTCTTACACTCT
CTCTTTTCTGTACTCACCTTTTCCCCCTTTTCTGTTTGTTTTTTATACTC
GGCTCTCTCCCTTTTTCTCTCTTTCCCCTGTGATCCTATTTCATTTCGAT
ACCCGCTTTTCCCTCCTAGTCTCTATCATACCTTTCCCCCGGTTCACCCT
CTTGTCCCCCTTTTTCCCCCCTTTTACCCCCTCTTACCCTCCCATTTCAC
TTCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_o05.b1 MSMg01no403_o05.b1 CHROMAT_FILE:
MSMg01no403_o05.b1 PHD_FILE: MSMg01no403_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:20 2005
         (123 letters)



>mm_chrX_53471722_53472245
          Length = 524

 Score =  217 bits (112), Expect = 2e-61
 Identities = 121/124 (97%), Gaps = 1/124 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttagatgggaaatttgccttaaaagcaagtagattttcagcatgcataccaattgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gtttagatgggaaatttgccttaaaagcaagtagattttcagcatccataccaattgatg 260

                                                                       
Query: 61  aggccagaaaaagccttccatggctctgcttcaat-tgagccctttcctctgaagtaaag 119
           |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 aggccagaaaaaaccttccatggctctgcttcaatgtgagccctttcctctgaagtaaag 320

               
Query: 120 taac 123
           ||||
Sbjct: 321 taac 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 524
Length adjustment: 8
Effective length of query: 115
Effective length of database: 516
Effective search space:    59340
Effective search space used:    59340
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)