BAC Information

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BAC

Clone NameMSMg01-404G03
ChromosomeX (Build37)
Map Location 90,324,708 - 90,325,040
singlet/doubletsinglet
Overlap genenone
Upstream geneEG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
Downstream geneLOC100042663, Rp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404G03.T7 (MSMg01no404_g03.b1)MSMg01-404G03.TJ (MSMg01no404_g03.g1)
ACCAG503065AG503066
length741772
length of high quality
(start - end)
442 (62 - 503)333 (68 - 400)
definitionCHROMAT_FILE: MSMg01no404_g03.b1 PHD_FILE: MSMg01no404_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:02 2005CHROMAT_FILE: MSMg01no404_g03.g1 PHD_FILE: MSMg01no404_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCGCGTGCGTTAATACGACTCTCTATTTCGAGAGGATCCGCGGAATTC
AAGGTCCTTACCTAAACATAATAAAAGCAATCTACATCAAACCAGTAGCC
AACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGG
GACTAGACAAGGCTGTCCACTCTCGCCCTACCTATTCAACATTGTACTTG
AAGTATTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGGATACAA
ATTGGAAAGGAAGAAGTCAAAATATCACCTTTTGCAGATGATATGATAGT
ATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATGA
ACAGCTTCAGTGCAATAGCTGGATATAAAATAAACTCAAACAAGTCAATG
GCCTTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAAC
AACTCACTTCACAATAGTCACAAAACATAAAATAATTTGTTGTGACTCTA
ACTAATGAAGTCAGAGATCTGTATGATAAGAACATCAAGTCTCTGAATAA
AGAAATCCAAGAGGATCTCCGAAGATGGAAAGATCTCCCATGCTCCTGGA
TTGGCATGTATAAGTAAAGCTAAAATGGTTATCCTTTGTTAACGGATTAC
TACGGATTCAAATGCCATGGCCCTCCTTATTTCTAATCCCAATGCTTCAC
CGAAATTTTTTATGGGCCACCCCCCTATTTTTTATACTTTT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATAGTGAACATTGATTTTTTTCTTTTGGTCAAA
AATTTTAAAAATAATGCACCATGTTAGTTTGTCCTCCCTGGATTCAGATG
AGAAATTTCTACCTTTTGAATTGATTTTTCACAACATGACAGTTCTCTTG
AGTAGCATTTGCCATCAGATATTAGAAAGTGAATTATTATGTTCCTTAGC
ATAAATCCATTTGGGATTAAGTTTTTCCCAAGTCTTGAATATGTAGTTTT
TTTTCTCCAAATTTGTTATGTTTTCATGTTATATCTTTAATACTCTTTCA
GTTCTATGGTTTAGAGTCTTCTCTCCCCCTCCTCCTTTTCTTCCCTCTAT
GTATTTTTTTATCTCCATATATTGCAGACTGATTGTGTTACTTTGTTATG
CCTTCAGGCCCACTGATTATTTCCCCTCTCTTCTTCCCTTTGTTGTTATG
CTCCTTTTTTTTATTTTATGACCCTGGCCCTCTTTTTTTTTTTGCTTTGT
TGGTCTTCTCATTACTCTACCTCCCCACTTTTTTCGCCCCCCCTTTTTCT
TTTCTCCCTTTTTTCCCCCTCCCCCCTTCTTTTTTTCCCCCCTGTGTATT
TTTTTCTTTTTTTCTTTTTTTCTTTTTCTTTTTTTTTCCTATTTTCCCTC
CTCTTTTTTTTGTCCTATCTCTTCCCTTTCTATCTTTTTTCTCTCCCTAC
TTTTCTATTTTTTTTTTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_g03.g1 MSMg01no404_g03.g1 CHROMAT_FILE:
MSMg01no404_g03.g1 PHD_FILE: MSMg01no404_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:02 2005
         (333 letters)



>mm_chrX_90324701_90325433
          Length = 733

 Score =  621 bits (321), Expect = 0.0
 Identities = 330/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtgaacattgatttttttcttttggtcaaaaattttaaaaataatgcaccatgttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atagtgaacattgatttttttcttttggtcaaaaattttaaaaataatgcaccatgttag 281

                                                                       
Query: 61  tttgtcctccctggattcagatgagaaatttctaccttttgaattgatttttcacaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tttgtcctccctggattcagatgagaaatttctaccttttgaattgatttttcacaacat 221

                                                                       
Query: 121 gacagttctcttgagtagcatttgccatcagatattagaaagtgaattattatgttcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gacagttctcttgagtagcatttgccatcagatattagaaagtgaattattatgttcctt 161

                                                                       
Query: 181 agcataaatccatttgggattaagtttttcccaagtcttgaatatgtagttttttttctc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 160 agcataaatccatttgggattaagtttttcccaagtcttgaaaatgtagttttttttctc 101

                                                                       
Query: 241 caaatttgttatgttttcatgttatatctttaatactctttcagttctatggtttagagt 300
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 caaatttggtaagttttcatgttatatctttaatactctttcagttctatggtttagagt 41

                                            
Query: 301 cttctctccccctcctccttttcttccctctat 333
           |||||||||||||||||||||||||||||||||
Sbjct: 40  cttctctccccctcctccttttcttccctctat 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)