BAC Information

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BAC

Clone NameMSMg01-404K02
ChromosomeX (Build37)
Map Location 161,379,188 - 161,379,512
singlet/doubletsinglet
Overlap genenone
Upstream geneZrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
Downstream geneMospd2, Fancb, LOC627045, Glra2, LOC100040753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404K02.T7 (MSMg01no404_k02.b1)MSMg01-404K02.TJ (MSMg01no404_k02.g1)
ACCAG503252AG503253
length772741
length of high quality
(start - end)
325 (67 - 391)247 (65 - 311)
definitionCHROMAT_FILE: MSMg01no404_k02.b1 PHD_FILE: MSMg01no404_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:22 2005CHROMAT_FILE: MSMg01no404_k02.g1 PHD_FILE: MSMg01no404_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTGCACACAATCCGCGGAATTCTCTC
AGTATGCCATGACCTGGAGGAGCATTCTGTGATCAAAGGACTGCTCTTGT
CAGGGAGGAAAATGTGTCTCGGAGTAGAAGTGAACCATGATATTAAGCAC
TGCCATTCAGAAAAAGAAAGAGTATTGGTGCTGCCCACTTGATGGTTACA
TCACTGACGGTTTTGATGATTTTTTTTTTTTTTTTGAGACAGGGTTTCTC
TGTATAGCTCTGGCTATCCTGGAACTCACTTCGTAGACCAGGCTGGCCTC
AAACTCAGAAATCTTTTTGTCTCTGCCTCCCGAGTGCTGGGATTAAAGGC
GTGCGCCACTACAGTTTTGATCTTAAAGAGCTCTTTCAGGAGGCAGGAAT
CACAGAAGTCATAGCCCATGCTGAAGATACAGATGGAGACCTCTGGCCTA
AACTATAGTTGCCACAGATTGCAGGGCAACTGTGGAGCTGATGAAAGAGG
CTTGGCTTTCTGTTGTTACAGGAATTTGGCTTTTGTTGTTGCTATTGCTT
TTTTCTCGTTTGTTATCTAAACTTGTCTTTTCTTCTATCACTTAATCTAT
ATCCCATCTTTTCTCTTTCTCCCCTTTTTATTCTTTTTTCATTTAACTAT
TTTTTTTATTATTTTTTCTATCCTTTTATCCTAAACATTATATTCTTCCT
TTTATCTCACCCCTCCTCCTCACCCCTTCTTCTTATAATGTTATTATTTT
ACATCTCCCACCTACTCTTCCG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGAAATACCGTATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAATATCAAAAATTCAG
GTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCA
GTTCCTCAGATTTTTGTTTTTAGTACTACCAGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAAGAATGGATACAGAAAATGTGGCACATTT
ATACAATGGTGTACCACTCATCTATTATAAAGAACGACTTTATGAAATTC
CTATCCAAATGGGCGGACCTGAATGGCCTCATCCTGATTGATGTAACACT
TTCTCTTTTGAACTTACTCTATATGTACTCCCTTGATAAGTGTATACTCC
CCTTTTACTTACCTATCCCCTAGAATCTAGATTTAATTTGGTTTTTCCCT
TTGAACTTCATCACCAATGTAGAATTGTTTTGTTGCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_k02.b1 MSMg01no404_k02.b1 CHROMAT_FILE:
MSMg01no404_k02.b1 PHD_FILE: MSMg01no404_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:22 2005
         (325 letters)



>mm_chrX_161379156_161379880
          Length = 725

 Score =  565 bits (292), Expect = e-165
 Identities = 317/328 (96%), Gaps = 6/328 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggagcattctgtgatcaaaggactgctcttgtcagggaggaaaatgtgtctcggagta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 357 gaggagcattctgtgatcaaaggactgctcttgtcagggaggaaaatgtgtctcggagca 298

                                                                       
Query: 61  gaagtgaaccatgatattaagcactgccattcagaaaaagaaagagtattggtgctgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gaagtgaaccatgatattaagcactgccattcagaaaaagaaagagtattggtgctgccc 238

                                                                       
Query: 121 acttgatggttacatcactgacggttttgatgattttttttttttttttgagacagggtt 180
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 237 acttgatggttacatcactgacggttttgatga---tttttttttttttgagacagggtt 181

                                                                       
Query: 181 tctctgtatagctctggctatcctggaactcacttcgtagaccaggctggcctcaaactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tctctgtatagctctggctatcctggaactcacttcgtagaccaggctggcctcaaactc 121

                                                                       
Query: 241 agaaatctttttgtctctgcctcccgagtgctgggattaaaggcgtgcgccactacagtt 300
           ||||||||   || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agaaatctgcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccactacagtt 61

                                       
Query: 301 t---tgatcttaaagagctctttcagga 325
           |   ||||||||||||||||||||||||
Sbjct: 60  ttgatgatcttaaagagctctttcagga 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)