NCTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATCCGCGGA
ATTCAGTACTCTTCCATTCAGTTTGCAGTCATCCAAGCTCCTGAGAGCAA
TGCACTCCTTGTCCAGGATGACAGGGAGATTTATTGACAGAAGTGTCAGG
GGATGGTTATCTGCCACCCTGGGAGATGTTCCAGGAGGTTGGAGGGAGCT
CCAGGGACGCCTGGAGATTTCCCATCTGGGTGCAGCATTGGAGCCTCCTG
TAGAGGAGAGATTTTGTGCCCACTTGGCCATCTGATTTTGTTTCTTGGTG
GTAGAAGTCCCACAGGATTGGTGNTTTGGTTTCAGTCTTCATAGACTTTT
TGTGTGTTTTGTTTCTCTCCCTGTACATGACCTGGACGATTAGTACTCTC
CTTGGACTGACTCTTGACCATTGGACTGAAATTAAAACTAGGGCTCACAA
TCTATCTGTAGATGTCAAAAATGAAGTCTACCACTGATTCATTGACCAAA
AATCACGACCACCCCTCACACCCAAGAACCAACTTGGAGGTATGGGGATC
CCCACTGGAATGCGTGCGTGCCAGCCAGTATCTCTGTTCTGAGTGTCTGT
TTTCTGTTTTCTGAACAATCTTGCCCTTGTTGTGTTGGTTTGTTTGTCTG
TTTTTTTTTTTTCTTGGTACAGTGTGACTTTGGAACCCTCTCGATTTATT
CCGCAACTCCTGTAATTTTGCGATCGGATTTGCTTGATTTTATTATGTCC
CCN

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGATTTTTATTTGTTTATTTTTA
TTCACTAATTTTTATTCATTGGTGGTTTCATAAATTAATTCAGTTCTTTA
TAGCCCCTGTTACTCTTTTAAGGAAATGTTTGCTTTACCTTAATTTGGAT
TACAGTGTGATTTCTCTGATTTTTGACTTCACTTTTTTTTAATCTTAATT
TTATATTCACTTTTAAGACTCTGATGTCTTAAATAATTCATGTTCTTTCT
TCATGAAATTTTGGAAGCCTTGTGGATGATGATACATAGCATGCTTCTTT
TTTGTGAATTCTAGTTTTTCCAATGGGCTCTTTAATCTTTAAAATGATCT
TTATTTAATTTACTTGCAGTTTATTTTTCATGTGCATATGGGACAAATTA
TATCAATTTGCCTTCAGTTTACTGCTTTTAACCTATTATCTTCATGATAT
TAGTGTACTCATCTAGAAAGCTATCTGGTTTTCTTCATGTATTTTTGGTT
TTAGTTATTATTTCCTTTTAGTGCTTTTGTAATGAGTTACATTTATTTTT
CTAGATTTCTTTTTGCTTCATTCATTTTAAGAAACACCATAAATATTTAT
AGATTGGCTGGTTTACACTACCTGCCTCAAATTCCCCACCTAATAATAAA
TCCAGCACCAGACTTGACATTGAGTTATGTTCTTTTCTCACA

Query= MSMg01no405_o11.g1 MSMg01no405_o11.g1 CHROMAT_FILE:
MSMg01no405_o11.g1 PHD_FILE: MSMg01no405_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:02 2005
         (664 letters)



>mm_chrX_77235470_77236533
          Length = 1064

 Score = 1284 bits (664), Expect = 0.0
 Identities = 664/664 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagatttttatttgtttatttttattcactaatttttattcattggtggtttcataaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aagatttttatttgtttatttttattcactaatttttattcattggtggtttcataaatt 805

                                                                       
Query: 61  aattcagttctttatagcccctgttactcttttaaggaaatgtttgctttaccttaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aattcagttctttatagcccctgttactcttttaaggaaatgtttgctttaccttaattt 745

                                                                       
Query: 121 ggattacagtgtgatttctctgatttttgacttcacttttttttaatcttaattttatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggattacagtgtgatttctctgatttttgacttcacttttttttaatcttaattttatat 685

                                                                       
Query: 181 tcacttttaagactctgatgtcttaaataattcatgttctttcttcatgaaattttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcacttttaagactctgatgtcttaaataattcatgttctttcttcatgaaattttggaa 625

                                                                       
Query: 241 gccttgtggatgatgatacatagcatgcttcttttttgtgaattctagtttttccaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccttgtggatgatgatacatagcatgcttcttttttgtgaattctagtttttccaatgg 565

                                                                       
Query: 301 gctctttaatctttaaaatgatctttatttaatttacttgcagtttatttttcatgtgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctctttaatctttaaaatgatctttatttaatttacttgcagtttatttttcatgtgca 505

                                                                       
Query: 361 tatgggacaaattatatcaatttgccttcagtttactgcttttaacctattatcttcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatgggacaaattatatcaatttgccttcagtttactgcttttaacctattatcttcatg 445

                                                                       
Query: 421 atattagtgtactcatctagaaagctatctggttttcttcatgtatttttggttttagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atattagtgtactcatctagaaagctatctggttttcttcatgtatttttggttttagtt 385

                                                                       
Query: 481 attatttccttttagtgcttttgtaatgagttacatttatttttctagatttctttttgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attatttccttttagtgcttttgtaatgagttacatttatttttctagatttctttttgc 325

                                                                       
Query: 541 ttcattcattttaagaaacaccataaatatttatagattggctggtttacactacctgcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcattcattttaagaaacaccataaatatttatagattggctggtttacactacctgcc 265

                                                                       
Query: 601 tcaaattccccacctaataataaatccagcaccagacttgacattgagttatgttctttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaaattccccacctaataataaatccagcaccagacttgacattgagttatgttctttt 205

               
Query: 661 ctca 664
           ||||
Sbjct: 204 ctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)