BAC Information

Click to search

BAC

Clone NameMSMg01-406K18
ChromosomeX (Build37)
Map Location 61,823,370 - 61,823,606
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
Downstream geneLOC100040011, Ctag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406K18.T7 (MSMg01no406_k18.b1)MSMg01-406K18.TJ (MSMg01no406_k18.g1)
ACCAG504811AG504812
length744797
length of high quality
(start - end)
474 (71 - 544)239 (74 - 312)
definitionCHROMAT_FILE: MSMg01no406_k18.b1 PHD_FILE: MSMg01no406_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:04 2005CHROMAT_FILE: MSMg01no406_k18.g1 PHD_FILE: MSMg01no406_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGATCTTTCCATGACTTTTATCATGAATGGGTATTGGATTT
TGTCAAATGCTTTCTCTGCATTCTGTTCTTGTGGCTGTCTTTTTGGTTTG
TTGAAGAATTACTTTTTTGCTTTTTCTAGGGCATGGTTTCCGTCCTTGTA
TTAGCTTTTTTCTGTTATTATCCTTTGAAGAGCTGGATTCACGGAAAGAT
AATGTATGAATTTGGTTTTATAGTGGAATACTTTGCTTTCTCCATCTATG
GTAATTGAAAGTTTGGCTTTTTTTAGTATCCTGGGATGGCATTTGTGTTC
TCTTAGTGTCTGTATATTGTCTGTCCAGAATCTTTTGGCTTTCACAGTCG
CTGGTGAGAAGTCTGGATTAATTCTAATAGTCCTGCCTTTATATGTTACT
TGACCTTTTTCCCTTACTGCTTTTAATATTCTATCTTTATTTAGTGCATT
TGTTGTTCTGATTATTACGTGTCGGGAGGAATTTCTTTTCTGGTCCAGTC
TATTTGGAGTTCTGTAAGCTTCTTGTATGGTCATGGGAATGTCTTTCTTT
ACGCTTGGAAAGTTTTCTTTCTATATATTGTTTAAGATTTCTTTTTGTCT
TTTTTATTGACAATTTTTATTCCTACCATTCCTATTATCTATTTTGTAGG
TTCTTCCCCATTGGCATCCTGAATCTCCCCGTTTGTTTTTTTTT
NCCGATGATATGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCTCATATAAATCTGATAATTGGGAC
TAAGAATTTACTAAGGCTAATGTGCACAGAATTAAGTGCTCCCTATAGCT
TCAGGAACTGAAGAAAAAAGCAATTGATAGGATTATTCTAGTTATTATTC
TACAATAAAAATCCAAATTTAATACCTTTACAATATGGCTATTGATTTTA
TATATATATAGTAGATCTACATAAAGACCCAGCTATACCACTCCTGGGGC
ATATATCCAAAAGATACTCTTCCATACCACAAGGACACATGCTCCACTGT
GTTCCAAACCAACTTATTGATAAACCGATTGACTGACAACATGCCCACCC
AAGGAGGAACCGGTTTTTTCTTCAGGGGAACGGTCAATTCGGGGGTTTTT
TTTGGGGGGATGGTTTCCGAATGGGGAAAAAAACTCCCGGAAAATGACCC
CAGGTGGGGTTCCGGCGGTTCAAAACAATTTCCCCCCCCTAAAAAGGGGG
GGGGGGTGATCTTGGGAATTTTAGCTTTTTCTGGGGAAAAACATTTTTAT
TTCTCTTTCTTTTTACCTCTTTGTATTTTTTGTGCTCTCTTTTCCTTTTT
TTTTTCATTTTTTCAACCCCTCTCCTTCCTTTTGTTCCATTTCTCCTTTT
GCTATTCCTTTTTCCCCCCCTTCCCTCCTTTTCCATTTCCTTCTTTTCCC
ACTTCTCACCTTCCTCTTTTACATTTTTTATCCTCTTCCCCTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_k18.g1 MSMg01no406_k18.g1 CHROMAT_FILE:
MSMg01no406_k18.g1 PHD_FILE: MSMg01no406_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:04 2005
         (239 letters)



>mm_chrX_61823170_61823807
          Length = 638

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%), Gaps = 2/239 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcatataaatctgataattgggactaagaatttactaaggctaatgtgcacagaatt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ttctcatataaatctgataattgggactaagaatttacta-ggctaatgtgcacagaatt 259

                                                                       
Query: 61  aagtgctccctatagcttcaggaactgaagaaaaaagcaattgataggattattctagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagtgctccctatagcttcaggaactgaagaaaaaagcaattgataggattattctagtt 319

                                                                       
Query: 121 attattctacaataaaaatccaaatttaatacctttacaatatggctattgattttatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attattctacaataaaaatccaaatttaatacctttacaatatggctattgattttatat 379

                                                                      
Query: 181 atatatagtagatctacataaagacccagctataccactcctggggcatatatccaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 atatatagtagatctacataaagacccagctataccactcctggg-catatatccaaaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)