BAC Information

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BAC

Clone NameMSMg01-406N02
ChromosomeX (Build37)
Map Location 159,195,289 - 159,195,793
singlet/doubletsinglet
Overlap genenone
Upstream geneRai2, Gm47, Nhs, Reps2, LOC654358, LOC100041557, LOC667630
Downstream geneRbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406N02.T7 (MSMg01no406_n02.b1)MSMg01-406N02.TJ (MSMg01no406_n02.g1)
ACCAG504923AG504924
length738736
length of high quality
(start - end)
511 (49 - 559)598 (79 - 676)
definitionCHROMAT_FILE: MSMg01no406_n02.b1 PHD_FILE: MSMg01no406_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:16 2005CHROMAT_FILE: MSMg01no406_n02.g1 PHD_FILE: MSMg01no406_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTGTCCTTCACATGCTGCAATTACAAGTGTCCATCACCACT
TCCTGCTGGAACTGTTTTTTTTTACTGTTTTTGTTAAATTGAATACATTG
GTACTAATCTATTTTTGTATGTTTTTTTCCCCCCATAAAAATCTAACACC
AGTCTTCTGTTTTGAGTTGCTTAACTGTTCGGTTTTGTTTTGCCTGTCTC
CCCAGGCTCTTAGCCGTGCTCTTGGTCTTCCTTGGCGCTTTTTCTGTGGT
TATCTCCTTGTTTTTCCTCTGTAGGTTAAGTCCTAGTGGAAAGAAAGTAC
AACTCGTTTTAGGCGTGAGACGTGGGTTTTGTTAACTAAGACAGGTCCTG
TTTACGGATCTTTGAAGATGCCTCAGTGGATAAGAGTGTTTGCTGTGCGA
GAGGACTTTGAGTTTTAGTCCCCGGCACTCAGCAGGCTCAGGACGTGTCT
TCACTTGCCGTGTCACAACAATGCGGGGTGGGGGACTGCAGTGACAGATA
AATCCTGTGAGCTCCCTAGCCAGCAAGCCAGCCTAGCTGAAACAGCAAGC
TTCAGTTTGGTGAGAGTCCCTGGCTCTAAAAAAATGTGAGTAACAATAGA
GAAAGACTCCCAGGCCTCTGGTTGCACGTTTGTGCACAAATGCCCTACCA
CAACACTAATAGTGTTTAGGAACTGTTTCTCGTACCTA
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGCTTTGGCCATTTGGCTC
TGGCTTTATAGTCAAGAGGAGAAGGAGAGTACTGGGACAATTGATGCTGG
TTAGCTGGAACTAAGAAATTAGTGGTGATTAGGAAACCAGTATCATTGAG
GTCACATCTTCAGGGAAGTGTTTTCTGCGAGCACAAAGCCAAAGATAGCC
AAGGTTGTATCTTGTGCTGCAGCTGTACTTGGTAATTTTTAAGAGTCACC
CAGATGGTACTGGTTTTGAAGGCATGAAGGGGTAATGAATAGCAGCTGAG
GCTTGGCACTGTGAGAGGCCATGAAAGGCCATTGGTGAAGGTGCAGCTTC
AGTTGCAGTTAATGACACAGGACTGAAGGGGTCATGAAGAGGATTTGATG
GCACCATTTGATGATACTGAACTGGACTGATGGCACATTTCTTGGCACCA
TGAAGAGAGTCTATGAGAAGGTATTGGTGAAGCCTAGTTGCAGCAGAAGT
CTCCAGCATATTTGAGATGCCAGTACCATGCATGGGATGATCACCAAGAA
CAACAGCAGCAGTGGAATGGATCAACCTGAGCTTAGAGTGATACTGAGGG
AAGAGCTGGAAAAGTGATGCCAGCCCTTTGGAGGAACCCAGAAGATCATG
TGTGGATCCCAGAACTTTTAACAAGAAGCTGTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_n02.b1 MSMg01no406_n02.b1 CHROMAT_FILE:
MSMg01no406_n02.b1 PHD_FILE: MSMg01no406_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:16 2005
         (511 letters)



>mm_chrX_159195227_159196137
          Length = 911

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgtccttcacatgctgcaattacaagtgtccatcaccacttcctgctggaac 64
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaattcattgtcccccagatgctgcaattacaagtgtccatcaccacttcctgctggaac 508

                                                                       
Query: 65  tgtttttttttactgtttttgttaaattgaatacattggtactaatctatttttgtatgt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 507 tgtttttttttactgtttttgttaaattgaatacattggtactaatctatttttgtgtgt 448

                                                                       
Query: 125 ttttttccccccataaaaatctaacaccagtcttctgttttgagttgcttaactgttcgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttttttccccccataaaaatctaacaccagtcttctgttttgagttgcttaactgttcgg 388

                                                                       
Query: 185 ttttgttttgcctgtctccccaggctcttagccgtgctcttggtcttccttggcgctttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttttgttttgcctgtctccccaggctcttagccgtgctcttggtcttccttggcgctttt 328

                                                                       
Query: 245 tctgtggttatctccttgtttttcctctgtaggttaagtcctagtggaaagaaagtacaa 304
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctgtggttatttccttgtttttcctctgtaggttaagtcctagtggaaagaaagtacaa 268

                                                                       
Query: 305 ctcgttttaggcgtgagacgtgggttttgttaactaagacaggtcctgtttacggatctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctcgttttaggcgtgagacgtgggttttgttaactaagacaggtcctgtttacggatctt 208

                                                                       
Query: 365 tgaagatgcctcagtggataagagtgtttgctgtgcgagaggactttgagttttagtccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tgaagatgcctcagtggataagagtgtttgctgtgcgagaggactttgagttttagtccc 148

                                                                       
Query: 425 cggcactcagcaggctcaggacgtgtcttcacttgccgtgtcacaacaatgcggggtggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cggcactcagcaggctcaggacgtgtcttcacttgccgtgtcacaacaatgcggggtggg 88

                                    
Query: 485 ggactgcagtgacagataaatcctg 509
           |||||||||||||||||||||||||
Sbjct: 87  ggactgcagtgacagataaatcctg 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)