BAC Information

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BAC

Clone NameMSMg01-407D24
ChromosomeX (Build37)
Map Location 110,228,802 - 110,229,114
singlet/doubletsinglet
Overlap geneChm
Upstream geneTex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112
Downstream geneEG664918, Dach2, LOC237016, EG664945
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407D24.T7 (MSMg01no407_d24.b1)MSMg01-407D24.TJ (MSMg01no407_d24.g1)
ACCAG505253AG505254
length769747
length of high quality
(start - end)		453 (44 - 496)133 (75 - 207)
definitionCHROMAT_FILE: MSMg01no407_d24.b1 PHD_FILE: MSMg01no407_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:50 2005CHROMAT_FILE: MSMg01no407_d24.g1 PHD_FILE: MSMg01no407_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTGTCTTTGCTGGAGTTTCCATAACTAACTCTAACATTAGCTCAT
TATAATATCTGATGCTGGACCATAGGAAGCTTCACAGTTGAACTGGGTTC
CTAAGAAGCTATTAAAAGGAATGAATTTATGAAATTCCTAGGCAAATGGT
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAAGAAC
TCAAATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGT
ATACCCAAGATATAAGATATAATTTGCAAAACACGTGAAACTAAAGAAGA
ACGAACACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAACCAAT
CACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGA
TGGACCATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATTAGCCT
CCAAACGATGACACCATTGCATACACTAGCAAGTGTTTGCTGAAAGGACC
CTGATATAGCTGTCTCTTGTGAGACTAGGACGGGGCCTAGCAAACACAGA
AGTGGATGCTCCCGGTCAGCTATTGTATGGATCAACAGGGCCCCATTGGA
GAGCTAGAGAAGGTACCCCGGAGCTAAGGGGACTGGACCCCCTACGGGGG
TGACCTTTTTAAAATACCNGTCCCCGAGGTTTTCCCCTATTGAAAAGGAA
AAAAGAGGGCCCGCGGCCC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACATTTACAAGCTTGTGTTATGCA
AACCTTGTTCATTGATTTAAAACTGTTGGTTAAATAAAATTGGCTACAGC
CAGTTACTAGAGGGATTAGAATTGGGTGGGTTTAAGTTAGGTTGTGGGTG
GATAANGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTTTTTTNNTNTTTNTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTNTTNTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTCCNNNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTTTTTTTTTTTTTTNNTTT
TTTTTTTTTTTTTTTTCTTTTTTTTTNTNTTTTTCTTTNTTTTTTTTTTT
TTTTCCTTTTTTTNTTTCTTTTTTCCCTTTTTCTTCTTTCCCCCCTCCCT
TTTTTTTTCCTTCTTTTCCTTCTTCCCTCTTCTTTTTTCCCTTTTTGTCC
TCCTTTTTTNTTCTCTTTTTTTCTTCTCCGTTTTCTTTTTCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_d24.b1 MSMg01no407_d24.b1 CHROMAT_FILE:
MSMg01no407_d24.b1 PHD_FILE: MSMg01no407_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:50 2005
         (453 letters)



>mm_chrX_110228802_110229654
          Length = 853

 Score =  588 bits (304), Expect = e-172
 Identities = 312/316 (98%), Gaps = 3/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgtctttgctggagtttccataactaactctaacattagctcattataata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaattcttttgtctttgctggagtttccataactaactctaacattagctcattataata 254

                                                                       
Query: 65  tctgatgctggaccataggaagcttcacagttgaactgggttcctaagaagctattaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tctgatgctggaccataggaagcttcacagttgaactgggttcctaagaagctattaaaa 194

                                                                       
Query: 125 ggaatgaatttatgaaattcctaggcaaatggttggacctggagggcatcatcctgagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggaatgaatttatgaaattcctaggcaaatggttggacctggagggcatcatcctgagtg 134

                                                                       
Query: 185 aggtaacacaatcacaaaagaactcaaatgatatgtactcactgataagtggatattagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aggtaacacaatcacaaaagaactcaaatgatatgtactcactgataagtggatattagc 74

                                                                       
Query: 245 ccagaaacttagtatacccaagatataagatataatttgcaaaacacgtgaaactaaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 73  ccagaaacttagtatacccaagatataagatataatttgcaaaacacatgaaactaaaga 14

                           
Query: 305 agaacgaacaccaaag 320
           |   ||||||||||||
Sbjct: 13  a---cgaacaccaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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