Query= MSMg01no407_k15.b1 MSMg01no407_k15.b1 CHROMAT_FILE:
MSMg01no407_k15.b1 PHD_FILE: MSMg01no407_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:22 2005
(667 letters)
>mm_chrX_66298910_66299975
Length = 1066
Score = 1208 bits (625), Expect = 0.0
Identities = 654/667 (98%), Gaps = 7/667 (1%)
Strand = Plus / Minus
Query: 4 ggaattcattcttccatgaaaactgggcaaattatacctcattaaactatacttatatgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ggaattcattcttccatgaaaactgggcaaattatacctcattaaactatacttatatgt 807
Query: 64 aatctaacttagaacagattgaaaaaagaaagaatttatataatgctctccagcctgaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aatctaacttagaacagattgaaaaaagaaagaatttatataatgctctccagcctgaaa 747
Query: 124 ttcagggtaacatattcattgtttataaacatggtcaggctgtgatttttttaaagctgg 183
|| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 746 tttagggtaacatattcattgtttacaaacatggtcaggctgtgattttttttaagctgg 687
Query: 184 aatagagaattagaaagagaagcattaaaaaaaaaatcacagatggaaactgactgtaaa 243
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 686 aatagagaattagaaagagaagcatt----aaaaaatcacagatggaaactgactgtaaa 631
Query: 244 aagataagatgggtaatttccaatcttttcagagcacagaacattatcttgttatttttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aagataagatgggtaatttccaatcttttcagagcacagaacattatcttgttatttttt 571
Query: 304 atgtgctgttctctttgtctcctttctgagagaaaaggcttttttttcttccttaaggag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atgtgctgttctctttgtctcctttctgagagaaaaggcttttttttcttccttaaggag 511
Query: 364 acatagcctttagaaactaatactgtagcacaaacatagt---aaaaaaaaatcacagta 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 510 acatagcctttagaaactaatactgtagcacaaacatagttaaaaaaaaaaatcacagta 451
Query: 421 atagacaagttcattggacacacggatatgtcagataatttaagctgaaaatatctctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atagacaagttcattggacacacggatatgtcagataatttaagctgaaaatatctctat 391
Query: 481 tagtaatgagatagagatccaatgacatcaggaaaatagttaatgcagctttctttgaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tagtaatgagatagagatccaatgacatcaggaaaatagttaatgcagctttctttgaaa 331
Query: 541 agttaaaaacagcaattctgttggtattttggtgactctatgaagccaataaccttaaca 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 330 agttaaaaacagcaattctgttgatattttggtgactctatgaagccaataaccttaaca 271
Query: 601 ggtggaaagaacagaaatttgttcatccaactgtagttattttttacatcaaataatgag 660
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 270 gggggaaagaacagaaatttgttcatcgaactgtagttattttttacatcaaataatgag 211
Query: 661 ttaatgt 667
|||||||
Sbjct: 210 ttaatgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space: 693792
Effective search space used: 693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_k15.g1 MSMg01no407_k15.g1 CHROMAT_FILE:
MSMg01no407_k15.g1 PHD_FILE: MSMg01no407_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:22 2005
(562 letters)
>mm_chrX_66133881_66134844
Length = 964
Score = 920 bits (476), Expect = 0.0
Identities = 527/564 (93%), Gaps = 32/564 (5%)
Strand = Plus / Plus
Query: 1 tctcgagaactggaaacctgtttccttttgctccggagccatttctaagtcagctctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcgagaactggaaacctgtttccttttgctccggagccatttctaagtcagctctcag 260
Query: 61 aggtttcaagaactatgtgtcatgatgcttacctgacttttgagtatcatgtgactgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtttcaagaactatgtgtcatgatgcttacctgacttttgagtatcatgtgactgtag 320
Query: 121 tttatttaattttctagaggaaatccctctaagtttattggtctttttagggggccctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tttatttaattttctagaggaaatccctctaagtttattggtctttttaggtggccctaa 380
Query: 181 caca--tttttttaatgtagcaaagcagaggcaaatttctgggtagccttgaaattattt 238
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatttttttttaatgtagcaaagcagaggcaaatttctgggtagccttgaaattattt 440
Query: 239 ttgtgccaaattgaaaaatatgtattttagaatataatatagtcacaacaatttttatct 298
|||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ttgtgctaaattgaaaaatgtgtattttagaatataatatagtcgcaacaatttttatct 500
Query: 299 tccccttcttccttccaaatcctcccttatacatctccctattctccttcaaatttatgt 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccccttcttcgttccaaatcctcccttatacatctccctattctccttcaaatttatgt 560
Query: 359 cttcttattgtactaattgtttgcatgcatatatgtatgatttcactgttgttgcacaca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcttattgtactaattgtttgcatgcatatatgtatgatttcactgttgttgcacaca 620
Query: 419 catatgcacatatacacacatacacacacatatatatacatatatacatatatatatata 478
||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catatgcacatatacacacatacacacacatatatata---------------------- 658
Query: 479 tatatatatatgcttgaataaacaaacacatatatattcccaaatataaccagttcagta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 --------tatgcttgaataaacaaacacatatatattcccaaatataaccagttcagta 710
Query: 539 tatataatgttacttgtttgtatg 562
||||||||||||||||||||||||
Sbjct: 711 tatataatgttacttgtttgtatg 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 964
Length adjustment: 10
Effective length of query: 552
Effective length of database: 954
Effective search space: 526608
Effective search space used: 526608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
