BAC Information

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BAC

Clone NameMSMg01-409B10
ChromosomeX (Build37)
Map Location 48,747,738 - 48,748,000
singlet/doubletsinglet
Overlap geneHs6st2
Upstream geneOlfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356
Downstream geneUsp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409B10.T7 (MSMg01no409_b10.b1)MSMg01-409B10.TJ (MSMg01no409_b10.g1)
ACCAG506656AG506657
length817812
length of high quality
(start - end)
432 (43 - 474)262 (74 - 335)
definitionCHROMAT_FILE: MSMg01no409_b10.b1 PHD_FILE: MSMg01no409_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:19 2005CHROMAT_FILE: MSMg01no409_b10.g1 PHD_FILE: MSMg01no409_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCTTTGTTCTTTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACATGATAACAACCAGCTGTGCCAGCACCATTTGTTTGAAATGCT
GTCTTTCTTCCACTGTATGGTTTTAGCTCCCTTGTCGAAGATCAAGGGAC
CCTAGGTGTGTTGCTTTCTTTCTCGGGCCTTTATTTCTATTCTTTTGGCC
TTTCTTTCTGGCCTCTCTCCTAGTATCAGGTTGTTTTCATTCCTTTCTGC
TCTTTTAGCCATACTTCTTCTTCCTTTTTCTTTTTTCGTCTTTTTCTTAT
TCCTTTTTTTCTTCTTATTCTATCTCTTTCTTTTTTCTTCTAACAATATT
CTTTCCTTATCTACACTTATATTGTCTCTCTTCTCCTCTTTTTTCCATGT
TATTATCTCTCTTTCTG
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGGACAGTTTTCAGGAGGAGGATAC
TTGGACCATGTGGGTCCTAGGGATCAAACTCATGCCATTAGACTTGGCAG
TAAGTGCCTTTACCCACTGAACTACCTTTCTGGCCCCACAATAGAAGGTG
GTCAGCCTTGTGACAGTGCCTTGGTGAACTGCCTTGTGACACTCGAGGCA
TCATGGGTCTACGGGTGCACTGAATGATCAGACATTCATTAACCCAGGAA
ACTGATGAGGACTTCTGAAATCTAGTCGTCCTGGATGGATATCGGTTGCT
GGTGACCTTGCTTAATTTCTTCCTTTTAAAGGAACCCAATCCTCCTCAAA
ATGCTTCTGGATTCTGATTATTCCCTCTTGCTCTGGCAGTATACTTTTTT
CCTGGGTGCAAGGTCTGCATCCCAGGCCTTTATTAAAATAAATATGGTGG
TTGCAGTCCTGTGGGTTTTTTGTTAATAATCTCCCTCTCTTCATTATTTG
TATCCCTTCTTCTTTTTTGTAATTCTACTCGTTTATTTCTCCCTTTTATA
CTGCCTCGTCCATTCTCTATTATACTCACTTCCTTCTTTTCGTTCACCAC
TTCTTCTTTTCCGCTTCTTTTACCCTTTTTCTTCCCCCCCTGTTCTTTTC
ACCCACAATTCTGTTGGATTCACCTTTCTCCTTTTACATACCCTATTTAT
TTCTTCTTTTTTTTCTCTTTTCCCCCCTCCCAGTTCCCACCTGCTTCTTT
TCTTGACTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_b10.g1 MSMg01no409_b10.g1 CHROMAT_FILE:
MSMg01no409_b10.g1 PHD_FILE: MSMg01no409_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:19 2005
         (262 letters)



>mm_chrX_48747538_48748200
          Length = 663

 Score =  455 bits (235), Expect = e-132
 Identities = 256/263 (97%), Gaps = 1/263 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggacagttttcaggaggaggatacttggaccatgtgggtcctagggatcaaactcat 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggacagttttcaggcggaggatacttggaccatgtgggtcctagggatcaaactcat 260

                                                                       
Query: 61  gccattagacttggcagtaagtgcctttacccactgaactacctttctggccccacaata 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gccattagacttggcagtaagtgcctttacccactgaactatctttctggccccacaata 320

                                                                       
Query: 121 gaaggtggtcagccttgtgacagtgccttggtgaactgccttgtgacactcgaggcatca 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggtggtcagccttgtgacactgccttggtgaactgccttgtgacactcgaggcatca 380

                                                                       
Query: 181 tgggtctacgggtgcactgaatgatcagacattcattaacccaggaaactgatgaggact 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggtctacaggtgcactgaatgatcagacattcattaacccaggaaactgatgaggact 440

                                  
Query: 241 tctgaaatctagtcg-tcctgga 262
           ||||||||| ||||  |||||||
Sbjct: 441 tctgaaatccagtccatcctgga 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 663
Length adjustment: 9
Effective length of query: 253
Effective length of database: 654
Effective search space:   165462
Effective search space used:   165462
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)