BAC Information

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BAC

Clone NameMSMg01-413E11
ChromosomeX (Build37)
Map Location 58,345,481 - 58,345,717
singlet/doubletsinglet
Overlap geneLOC627159
Upstream geneMcf2, Atp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps
Downstream geneEG631990, LOC632000, LOC100039759, EG245440, LOC100039778, Ldoc1, LOC654353, EG627299, LOC666654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413E11.T7 (MSMg01no413_e11.b1)MSMg01-413E11.TJ (MSMg01no413_e11.g1)
ACCAG509850AG509851
length742763
length of high quality
(start - end)
245 (64 - 308)244 (69 - 312)
definitionCHROMAT_FILE: MSMg01no413_e11.b1 PHD_FILE: MSMg01no413_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:55 2005CHROMAT_FILE: MSMg01no413_e11.g1 PHD_FILE: MSMg01no413_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
AGTCTTTCAGGACCTCCTAGGACAGTAGTTCTCANACGTCCTAGTGCTTC
AGCTCTTTAATTCAATTCCTCATGTTGTGGTGATCCCAACTATAGAATTA
TTTCTACTGCTACTTCATAACTGTAATTTTGCTACTGTTATGAATCCTAA
TGTCCATACATGATATGAAGATTATCTGATATGTAACCCTTGTGAAAGGG
TTGTTCAACCCCAAAGGGGTTAAGACCTATATGATGAGAACCATTGCCCT
AGGAAGTCTCTATTATTTACTCCTTAATAATAAAGGAAGAGAGGGAAGAA
AGTCTTTGTAATTTCCCTCTTCTTTGCTCTTCTGAACCAAGAAATGATGC
ATGTTATTTCTTGCCCAACATGGGACCCCGCTCAGCTCATCAGTGAGATA
ATGCAAGTTCTTCCACTGAGTGAAATAGGAGTACAGGTGTGTACTATATA
GTTTCACGCCCATTTGATGATATACCTAGTTGTCTGACATGATGTAGCCT
CCCTTATGATCATGCCTCCCCAATATTGCGCTGCAATTTAGCCTGTTTGC
TAACTTCTTAAATTATTGATTGCTGCTGACGTACCCCTGCTCTTTTGTTT
TTCTATCTCTCCTCCTGTTCCTTACACTCTTCGCCATTCCTCTATCAAAA
TCTCCTGCTGACACTATCCACTCTAATACTCCCCCCCTCCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCATAGGTTTCTAGACTGGCCATGCCCAAGA
GGAGAAGGAGAAACAGCAGGCAAAAAGAGCAGTGGGTACAGAACCCAACT
CTTTTCTGAGCCAGTGAGTTCCCAGCCAGGTACATGCCCTGGAGTTACCT
CGGCTGGCTGAGGTAGGGGCAGGAAGCGGGGGAGGGGGTTCTTCGGTGTG
GGGATGTGGCTACTCTAGCAGGAGCATCCACTGAGAACTGGGTGTACTGG
GACAAGAAGAATTTGGTAATTGTAGGGAGCCAGCTAGATGGAGGAGGAAC
AGAGTTTCTTCACAGGTCACAGAGACGGTCTGCCCCAAGGGACTGTTCTT
CGTGATACCAACCCCTTCTGGAGCCCCCAATCTATGTCTCTTGTGTCCCG
GGCACTATGCACTGCCCATCCAGATACCTTCCTGGTCTTAATTAGGGAAA
GGTCCCCAAATGTTATTCCTTGTAGCAAGGCTGGTTTTCTCCGTTGGACT
CCCCCCTTCCGCTTCTTTTTCTCTCGTTCCACCCTACCACTTTGTCCTTG
TATTACGTTATCACAACCTCCTCTACAATACGGGATTCTATAACTCACCC
CCCTTTCTTTTTTTTTTTTTCCTCCTTACATCTCCCATTTGTTTTCATGC
TTGTTTTTCACCGGCTTTAACCCCTTACCTCCTTTTATATCTTTTTACTC
CTATATCCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_e11.g1 MSMg01no413_e11.g1 CHROMAT_FILE:
MSMg01no413_e11.g1 PHD_FILE: MSMg01no413_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:55 2005
         (244 letters)



>mm_chrX_58345281_58345918
          Length = 638

 Score =  205 bits (106), Expect = 2e-57
 Identities = 208/246 (84%), Gaps = 12/246 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccataggtttctagactggccatgcccaagaggagaaggagaaacagcaggcaaaaaga 60
           ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||   ||
Sbjct: 437 tccatgggtttctagactggccatgcccaagaggagaagaagaaacagtaggcaag--ga 380

                                                                       
Query: 61  gcagtgggtacagaacccaactcttttctga-gccagtgagttcccagccaggtacatgc 119
           ||||||||||||| ||| |||| |||||| | ||||||||||||| ||    ||||||||
Sbjct: 379 gcagtgggtacaggaccaaacttttttct-atgccagtgagttcctag----gtacatgc 325

                                                                       
Query: 120 cctggagttacctcggctggctgaggtaggggcaggaagcgggggagggggttcttc--g 177
           |||||| ||||||| | || |||| |||||| |||||| | ||||||||| |||||   |
Sbjct: 324 cctggaattacctcagttgactgaagtagggacaggaatcaggggaggggcttcttatgg 265

                                                                       
Query: 178 gtgtggggatgtggctactctagcaggagcatccactgagaactgggtgtactgggacaa 237
           || ||||  ||||| |||||| |||||| ||||||| ||||| || ||||||||| ||||
Sbjct: 264 gtttggg--tgtggttactcttgcaggatcatccacggagaattgtgtgtactggaacaa 207

                 
Query: 238 gaagaa 243
           ||||||
Sbjct: 206 gaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 638
Length adjustment: 9
Effective length of query: 235
Effective length of database: 629
Effective search space:   147815
Effective search space used:   147815
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)