BAC Information

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BAC

Clone NameMSMg01-414A04
ChromosomeX (Build37)
Map Location 155,380,620 - 155,381,009
singlet/doubletsinglet
Overlap genenone
Upstream geneCnksr2, EG667483, LOC671033, LOC667487, LOC436243
Downstream geneLOC100040371, Rps6ka3, Eif1ay, Mtap7d2, A830080D01Rik, LOC100041359, Sh3kbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414A04.T7 (MSMg01no414_a04.b1)MSMg01-414A04.TJ (MSMg01no414_a04.g1)
ACCAG510407AG510408
length7671,178
length of high quality
(start - end)
531 (45 - 575)---
definitionCHROMAT_FILE: MSMg01no414_a04.b1 PHD_FILE: MSMg01no414_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:53 2005CHROMAT_FILE: MSMg01no414_a04.g1 PHD_FILE: MSMg01no414_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATACAATGCTTACGCTTACATAATGACAAAACAAAGATACAGGTTA
AAAGCAGCAGCAACAACAACAAAACAAAAACTCCCAAAACAAACAAATAA
AAACTCCTTATTTCTACCTTCTTATAATGAATCAGAAATAAGGACTCCAT
ATTCAAATTATTTCTCTATTAGATATTTGCAGGCTATAGCTGTCCCCTGA
GAGGCTTTGCCAGCACTTGACTAATACAGACATAGATACTCACAGCCATC
CATCCAACTGAGCCCAGGGAACCCAATGGTTAGGGGAAGGAGTGAAGGAG
CTGAAGGGGACTGCAACCCCAAGGGAAGAACAATATCAACTAACTGGACC
ACCCAGAGCTTCCAGGGACTAAACCACCAAAGAGTATACATGGAGGGACC
CATAGCTTCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTTAATTAGAGGATTGCCTTG
TTTGGCATCAATGGGAGGGGAGACCCTTGGTCCTGTGGAGGATTGATGCC
CCAGAGTAGGGGCATGCTAGAGGGGTGAGGCTGGAGTGGCTGATTGACTT
CCTCCTCTCTTATAATACTTTATTTTGTTTGCTTTTTGTTCCTACCTCTC
AATCTTAGTCCCATTTAACCATAGACTAATAAAACCCCCCTTCTATATTC
CTCTATTTATATTTTTN
AATAAAAAAAAATGGTTTNCTTTCATCTTCTATGACATTTATATTTTCAT
ATAATTACACATTTAATTATAACTCTATTAATTTCCCATAACAACATAGA
TTCTTCATTACTTCAACTTCTACTCATATACTACAATACTAAGTAGCAAA
TATATTCACACCACAAGTACACTCAATTCTTTCATTTTCATCTTCTATAT
GAACACATCACATCTATCCCTCCCCTCACATTCAAATTCCACTCTCTACC
CCTACATTACCACTTTCTTCCTTATCTACTCATCCCTACATCCAACTACA
TCCAAAAAATATATCCTATACACACTATTACCCCATTCCTAAATCATATC
TTACTAATATACTCATCCTACAACCTAATTTCTACATTATTATCATTAAT
ATAAATTTAATATAAATATAAAACTACATTATCCTATTATACTAAATTCT
CTAATTCATATCTATTTCATACTTATATTTTATTAATTATAAAATATTAC
TACAAACTTACAAATATAATAATTTATACGTACAACATAACACAACATTA
AATCAATAATTCAAACAAAATCATATTCTACTACTATACGAGTAGTTTTT
TATACATATCAACGCAAATATATTATAACGTTATCCCACATTCTCGCAAT
CAGATATATTCNTAATCTAAACCCACATTATATACTAACATTATACCACA
CGAATTAATACTTAATACACATACATCCTCTAATCNCCAGCTCCAACGAC
TACTTATTATATACTTCCTACATACTCCTCACTCCATATATATATAAACA
ACCTCTATAATAATACTANCATAATCTATCGCACTCGTTATTCCCTCACA
ATACCCCTCATCTCNACACTAAAGAATACTTCTATATAATCCCGTCTATC
TACTATAATTTCTAAGAACTCTCACACACACTCACATAAAATTACCTTAA
CAGTTAATTATCATATATAGACAAACCTACGATACACTTCAACTTATAAG
ATACTAATAACAAACTTTATTATATCATAAGTTACTACGTTTCATAATAA
CACTATCATACATATAAATATCACATATACTCATACCTCATCATATACAC
ATCACCTNATATTACATATACTAATCATTACATTTCTCTATAATATGTAA
CTCTACTTTNACACACTATCTATTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_a04.b1 MSMg01no414_a04.b1 CHROMAT_FILE:
MSMg01no414_a04.b1 PHD_FILE: MSMg01no414_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:53 2005
         (531 letters)



>mm_chrX_155380620_155381550
          Length = 931

 Score =  681 bits (352), Expect = 0.0
 Identities = 379/392 (96%), Gaps = 9/392 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatacaatgcttac--gcttacataatgacaaaacaaagatacaggttaaaagca 62
           |||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattcatacaatgc--acaggcttacataatgacaaaacaaagatacaggttaaaagca 333

                                                                       
Query: 63  gcagcaacaacaacaaaacaaaaactcccaaaacaaacaaataaaaactccttatttcta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcagcaacaacaacaaaacaaaaactcccaaaacaaacaaataaaaactccttatttcta 273

                                                                       
Query: 123 ccttcttataatgaatcagaaataaggactccatattcaaattatttctctattagatat 182
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 272 ccttcttataatgaatcagaaataaggaccccatattcaaattatttctctattagatat 213

                                                                       
Query: 183 ttgcaggctatagctgtcccctgagaggctttgccagcacttgactaatacagacataga 242
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 212 ttgcaggctatagatgtcccctgagaggctttgccagcacttgactaatacagatataga 153

                                                                       
Query: 243 tactcacagccatccatccaactgagcccagggaacccaatg-----gttaggggaagga 297
           ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||
Sbjct: 152 tactcacagccatccatccaactgagcccagggaacccaatggaagagttaggggaagga 93

                                                                       
Query: 298 gtgaaggagctgaaggggactgcaaccccaagggaagaacaatatcaactaactggacca 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 92  gtgaaggagctgaaggggactgcaaccccaagggaagaacaatatcaactaattggacca 33

                                           
Query: 358 cccagagcttccagggactaaaccaccaaaga 389
           ||||||||||||||||||||||||||||||||
Sbjct: 32  cccagagcttccagggactaaaccaccaaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)