Query= MSMg01no419_a21.b1 MSMg01no419_a21.b1 CHROMAT_FILE:
MSMg01no419_a21.b1 PHD_FILE: MSMg01no419_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:26 2005
(407 letters)
>mm_chrX_160951370_160952177
Length = 808
Score = 752 bits (389), Expect = 0.0
Identities = 403/411 (98%), Gaps = 7/411 (1%)
Strand = Plus / Minus
Query: 1 gctaatgtggttaaaagaacattctgatttcagactcagttgacctcttctgaacagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gctaatgtggttaaaagaacattctgatttcagactcagttgacctcttctgaacagtgg 549
Query: 61 ctccatgaacaaattccaactctcagtttcattttgggtaaagacagaaacatacttacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctccatgaacaaattccaactctcagtttcattttgggtaaagacagaaacatacttacc 489
Query: 121 catggcccaatacatactagctattattattatcttgtcgtgacactaaacagtgtcttg 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 catggctcaatacatactagctattattattatcttgtcgtgacactaaacagtgtcttg 429
Query: 181 attacatcccataagcattgcgtttaaaag----atttatgtagtgtaccaccatataag 236
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 428 attacatcccataagcattgcgtttaaaagagcaa---atgtagtgtaccaccatataag 372
Query: 237 aggactacaaagtttcaggaaagaagcctgtaagccctatccaacacaatgagctttcct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aggactacaaagtttcaggaaagaagcctgtaagccctatccaacacaatgagctttcct 312
Query: 297 ctggcctcgtaattaagtgtagatataattgaatttagcatagaccagatttgttcctca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctggcctcgtaattaagtgtagatataattgaatttagcatagaccagatttgttcctca 252
Query: 357 tctcaagctgcatctgacttccagaacaaacagatgcgagaagctactacg 407
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tctcaagctgcatctgacttccagaacaaacagatgcgagaagctactacg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 808
Length adjustment: 9
Effective length of query: 398
Effective length of database: 799
Effective search space: 318002
Effective search space used: 318002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_a21.g1 MSMg01no419_a21.g1 CHROMAT_FILE:
MSMg01no419_a21.g1 PHD_FILE: MSMg01no419_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:26 2005
(515 letters)
>mm_chrX_160780790_160781704
Length = 915
Score = 949 bits (491), Expect = 0.0
Identities = 509/515 (98%)
Strand = Plus / Plus
Query: 1 ttggtccccaattggtggcactctttggcgatgttggtgaggtgtgaccttatgaagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggtccccaattggtggcactctttggcgatgttggtgaggtgtgaccttatgaagaag 260
Query: 61 tgtgttactagaagtaggctttgagaggctaaagactctcactgttgcgaatccttgctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgttactagaagtaggctttgagaggctaaagactctcactgttgcgaatccttgctc 320
Query: 121 cctgcttcctgcttgctggtcaggatctaagttctcatcgtccagctccagccacagtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgcttcctgcttgctggtcaggatctaagttctcatcgtccagctccagccacagtgc 380
Query: 181 tgtgtctgctgccagagttccctgctaagaccaaatctcatccctaaggatccattggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtctgctgccagagttccctgctaagaccaaatctcatccctaaggatccattggcc 440
Query: 241 aagcaaacctttccttttataagttgccctttgggattttttttttttagaaactcatag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcaaacctttccttttataagttgccctttgggattttttttttttagaaactcatag 500
Query: 301 cagtagaaaagttactactatccaagtgttcctcaaccgcaatctccatgtcctgactac 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 501 cagtagaaaagttactactatccaagtgttcctcaactgcaatctccatgtcctgcctac 560
Query: 361 actatattcagttataatacagagttcaggccagcttgtgttttcaagcctgcccaaacc 420
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actacattcagttataatacagagttcaggccagcttgtgttttcaagcctgcccaaacg 620
Query: 421 gatagcagaagagaccgaatccacatggtaagagacgagcaggcagaacaggttgcctct 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 gatagcagaagagaccgaatccacatggtaagagaagagcaggcagaacaggttgcctct 680
Query: 481 gtttgtgtttatcccaaccatccccattttcctgg 515
||||||||| |||||||||||||||||||||||||
Sbjct: 681 gtttgtgttcatcccaaccatccccattttcctgg 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
