BAC Information

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BAC

Clone NameMSMg01-420D09
ChromosomeX (Build37)
Map Location 109,356,599 - 109,357,087
singlet/doubletsinglet
Overlap gene4933403O08Rik
Upstream geneLOC100042872, Rps6ka6, EG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570
Downstream geneEG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420D09.T7 (MSMg01no420_d09.b1)MSMg01-420D09.TJ (MSMg01no420_d09.g1)
ACCAG515130AG515131
length708758
length of high quality
(start - end)		58 (172 - 229)489 (69 - 557)
definitionCHROMAT_FILE: MSMg01no420_d09.b1 PHD_FILE: MSMg01no420_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:58 2005CHROMAT_FILE: MSMg01no420_d09.g1 PHD_FILE: MSMg01no420_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATATCAAAAATTGTGGCCGCTANNNAGAGACTACATTTCCAAAAGAG
CGGAGATCTTGTTATTATCAAAACAGCTCTGCGAAAACAGNTAGTATTAT
TGTTGGGAGGATTCTGCTTGTCGCCCCCAGCAGATTATTCTTGCTGAGTG
AGGACTATACCAATGCTGTTAATCCCATCCTTTCCTTGTTATTCAAAACT
ACTATGGTGCCATCAAATATTATACTGATGCACCTACAACTATTGGTGTA
AATTTTCTTAAGCATATTTTGAAGTTTTCAGAGTAACGACCCTACTAATT
TTGTTGATAATGCTGGGTTTCNATTTTTTTCCCAACATAGATATCCATCA
AAGCATAAATTATTTAATGCGCTCTTGATATTGTGAAGAAAAAGGTTAAT
CGCTAATTTGTGGGACCTATATGCGCAACACTGTGTTTATAATGTGTTAT
TAAATCTATAAAAACAACCCTGTGAGGAAAGTATTTATAGAATCTCTTAT
TATTGACCAAACCCCGACCCATACGCTCACTTGTGAAAACATTCTTTCCT
TGTGATCCTTATTATAAGATATTATAATCATTGTCCCCCCACTCTGCATT
GGCTTAAACTTAAAGGATATATGTGGCCCACAAAAAGTTGAGTAACATCT
TTTTTTTTATGCGCCCGCGCCNTCCCTTTATTCCCTAATTAAGAGCGGTC
TCCCCAGT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCATATTGCCTCTGGGACGTGCAGAATTATCC
TCAGGAATTCCAAAGTTTCCTTGAATTGAAGAATTGTCAAATCTTGGCAT
AATGGGAAAATGTTCTCCAGAATGAGATGGAATTACTCTTTGCCAGGCTC
CCTCCATGCTGTGTCTTTCCTTGATATTTTCTAAAACACAAGACAAGTTT
ATAAGTGACGATAAGATTGGCTTCAGTTTTGAGAACAAGCTATGATTAGG
GATGAGAAGTGTATTTCTAAATTTGATCTCAGTTCAATTACCTCAAAATG
ACATGGTGATTTTACACTTTATACAACTATTATTTAGAAATTACACTCTG
GGATGCAAAAGATGGACAAAGATAAAAAATGAGGAAGTATTTATATACCA
GAAGTTTAGGTTGACTAGAAAGTAGAGGTGGAGAAAAAGGAGGAACTATA
ATGTAGTGAGAGAAGAGCTACAAGCTGAAGGACTTTTAGGAACAAAGGTT
TTTACTATGTAATTTTATTTCTTTGGCAGCATGAAAACTTAATGAAATTA
GAATTTTAATGGAACTAAAAATTAGAAAAGAGGTAATCTTGAATACTATA
CCCACCAAGTAATTAATTAATTAATTAACGGGATTATTTACTCAACGGGG
GAAGTGGGGTTCCATTTCTTTTCCCACCTCCCCCTTCTTCTTTTCTTTTC
TTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_d09.g1 MSMg01no420_d09.g1 CHROMAT_FILE:
MSMg01no420_d09.g1 PHD_FILE: MSMg01no420_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:59 2005
         (489 letters)



>mm_chrX_109356399_109357287
          Length = 889

 Score =  938 bits (485), Expect = 0.0
 Identities = 488/489 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatattgcctctgggacgtgcagaattatcctcaggaattccaaagtttccttgaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tcatattgcctctgggacgtgcagaattatcctcaggaattccaaagtttccttgaattg 630

                                                                       
Query: 61  aagaattgtcaaatcttggcataatgggaaaatgttctccagaatgagatggaattactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aagaattgtcaaatcttggcataatgggaaaatgttctccagaatgagatggaattactc 570

                                                                       
Query: 121 tttgccaggctccctccatgctgtgtctttccttgatattttctaaaacacaagacaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttgccaggctccctccatgctgtgtctttccttgatattttctaaaacacaagacaagt 510

                                                                       
Query: 181 ttataagtgacgataagattggcttcagttttgagaacaagctatgattagggatgagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttataagtgacgataagattggcttcagttttgagaacaagctatgattagggatgagaa 450

                                                                       
Query: 241 gtgtatttctaaatttgatctcagttcaattacctcaaaatgacatggtgattttacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtgtatttctaaatttgatctcagttcaattacctcaaaatgacatggtgattttacact 390

                                                                       
Query: 301 ttatacaactattatttagaaattacactctgggatgcaaaagatggacaaagataaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttatacaactattatttagaaattacactctgggatgcaaaagatggacaaagataaaaa 330

                                                                       
Query: 361 atgaggaagtatttatataccagaagtttaggttgactagaaagtagaggtggagaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 329 atgaggaagtatttatataccagaagtttaggttgactagaaagtggaggtggagaaaaa 270

                                                                       
Query: 421 ggaggaactataatgtagtgagagaagagctacaagctgaaggacttttaggaacaaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggaggaactataatgtagtgagagaagagctacaagctgaaggacttttaggaacaaagg 210

                    
Query: 481 tttttacta 489
           |||||||||
Sbjct: 209 tttttacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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