BAC Information

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BAC

Clone NameMSMg01-420E18
ChromosomeX (Build37)
Map Location 90,617,317 - 90,617,891
singlet/doubletsinglet
Overlap genePola1
Upstream geneMageb18, EG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx
Downstream geneEG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420E18.T7 (MSMg01no420_e18.b1)MSMg01-420E18.TJ (MSMg01no420_e18.g1)
ACCAG515195AG515196
length768753
length of high quality
(start - end)
---576 (62 - 637)
definitionCHROMAT_FILE: MSMg01no420_e18.b1 PHD_FILE: MSMg01no420_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:05 2005CHROMAT_FILE: MSMg01no420_e18.g1 PHD_FILE: MSMg01no420_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTATCTCCTGCANNNNNGNNCTTTCTCGAGAGAGGGNGNANNNTTA
CTAACTTAGAAGGGGANNANNGCNNCCNAANAGAGGCAAAAGCCGCTACC
CCCACACAAAAAAGCAAGGCGGGGACCCCCACCAAAACCGCAGGCCAGAA
AGCCAGCGCAAAAAAGGGGGGGCCAGGGCAGCCACCCCCGCGGGAAACCC
CACCCGAAGGAAACAAACAAAACCCCCGAGGGGGGTTANCCCCCCCCGCA
GGCGGGGGGCGGAACACCCCAGACGGTTTTTTTCTTAAGACCCACATCTG
CAAAACACCCCGGGCGGGTTTGAAAACACAAAGCCACCAGCGGGTTTCCC
CCCATCAGAATGGGGGGCCACACTAACTTCCTCTTAGGGGGGGAAAGGGT
TCCTTTTTAACCAAACACACCTAAGGGGGGGACGCGCGGGGGAAGTTTTT
TCCTCCCCCCCACAACCTGACTTTTAGGCTGGGCGGGCGGGGGGGAACCT
CCCTGGCGTAAGAAAGGGCTCTTTTGTGTTTATTCCAAAAAACCCCCAAA
TCCCGGGTTCCCCACAAACCTAACCAAAGGGAATGGCGTCCCCTCCAGGG
ACCCCCCCAACCTCCCGGGGAGGCGCTGGAACACACCCCCTTTCTGGGCC
CTCCTTGGGGGAGAGAACCCTCCCCTGAAACGGAAGCAATAATAACCCCC
CCCCGCCCNGGCCGGTGCGTTCGTCTTCTTCTCCCCCCTATCTTCTCCTC
TCCTCCTCTTCGTCTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCCTGTGACCTTTTTGAGTAGTCTCAAGTGTTTTATTTT
GCTTTCTCTTTCACTTAAGTTCATCGAGACAGGACTGCATCGTGTAGCCT
AATCACTAAATATTTGATTAAAGAATTCCCAGAGGAAAATGAGGTCACAC
GAGTGATTTCAGGGATTTGGGAAAATTGTTCCTAGTAAATAGTACTGTTT
ATTACTGGTAAATGGCTTTAAGAAAAGCAGAACTCTGTATTGTCTGCTTT
TGACTCAGGTGTTCCATAAATTAAACTTATAAAACTTCCTTCATACTTTT
ACATATTGCTTATATAGATTCCACACGTTGCAAATAACTACAGGCAAATG
TCTGTCATTTGGCTGATACAAAGCTTGAACTCGAAGAATATCAGTTCTTT
GGACTGATGAGTGAGCCAAGCTGACTGCTTCTCACACTTGTTCAGGGCCC
TAGTCTTATCTTGCTATCAGCTGAGCAGTTTGCCCATAAAATGAGCACAG
CTGCATTACTCTGAGAAAATGGTCTCCAAGGAAGGCAGTGATTAGTTCTA
ANACATGAAGGGGATTATAAAGGTACTCTCTTTCTTGAAACCAGAAGATA
AGGATTTTACTGTAGGAATTATTTGCAATTTGGAGATGTCTAAGCATCTC
GAGTCAGGTTGGCTTTCCGGTATTAAGGATTTCTATTCCTTGGACTGCTA
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_e18.g1 MSMg01no420_e18.g1 CHROMAT_FILE:
MSMg01no420_e18.g1 PHD_FILE: MSMg01no420_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:06 2005
         (576 letters)



>mm_chrX_90617117_90618091
          Length = 975

 Score = 1085 bits (561), Expect = 0.0
 Identities = 572/576 (99%), Gaps = 1/576 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctgtgacctttttgagtagtctcaagtgttttattttgctttctctttcacttaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ccctgtgacctttttgagtagtctcaagtgttttattttgctttctctttcacttaagtt 716

                                                                       
Query: 61  catcgagacaggactgcatcgtgtagcctaatcactaaatatttgattaaagaattccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 catcgagacaggactgcatcgtgtagcctaatcactaaatatttgattaaagaattccca 656

                                                                       
Query: 121 gaggaaaatgaggtcacacgagtgatttcagggatttgggaaaattgttcctagtaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaggaaaatgaggtcacacgagtgatttcagggatttgggaaaattgttcctagtaaata 596

                                                                       
Query: 181 gtactgtttattactggtaaatggctttaagaaaagcagaactctgtattgtctgctttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 595 gtactgtttattactggtaaatggctttaagaaaagcagaactctgtattgtctgc-ttt 537

                                                                       
Query: 241 gactcaggtgttccataaattaaacttataaaacttccttcatacttttacatattgctt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gactcaggtgtgccataaattaaacttataaaacttccttcatacttttacatattgctt 477

                                                                       
Query: 301 atatagattccacacgttgcaaataactacaggcaaatgtctgtcatttggctgatacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atatagattccacacgttgcaaataactacaggcaaatgtctgtcatttggctgatacaa 417

                                                                       
Query: 361 agcttgaactcgaagaatatcagttctttggactgatgagtgagccaagctgactgcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agcttgaactcgaagaatatcagttctttggactgatgagtgagccaagctgactgcttc 357

                                                                       
Query: 421 tcacacttgttcagggccctagtcttatcttgctatcagctgagcagtttgcccataaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcacacttgttcagggccctagtcttatcttgctatcagctgagcagtttgcccataaaa 297

                                                                       
Query: 481 tgagcacagctgcattactctgagaaaatggtctccaaggaaggcagtgattagttctaa 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgagcacagctgtattactctgagaaaatggtctccaaggaaggcagtgattagttctaa 237

                                               
Query: 541 nacatgaaggggattataaaggtactctctttcttg 576
            |||||||||||||||||||||||||||||||||||
Sbjct: 236 aacatgaaggggattataaaggtactctctttcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space:   546190
Effective search space used:   546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)