BAC Information

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BAC

Clone NameMSMg01-420G11
ChromosomeX (Build37)
Map Location 107,609,699 - 107,610,138
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC245573, EG634340
Downstream geneLOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872, Rps6ka6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420G11.T7 (MSMg01no420_g11.b1)MSMg01-420G11.TJ (MSMg01no420_g11.g1)
ACCAG515277AG515278
length726749
length of high quality
(start - end)
624 (67 - 690)418 (319 - 736)
definitionCHROMAT_FILE: MSMg01no420_g11.b1 PHD_FILE: MSMg01no420_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:14 2005CHROMAT_FILE: MSMg01no420_g11.g1 PHD_FILE: MSMg01no420_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTACAACACGATCCGCGGAATATATA
TGGATAACAGATATTTACCAACCCCACATCTGAAAGAGGGTTAGTATCCA
AAATATAGTAAGGACTCAAGAAACTAGACATCAACAAACTAAATAATCAA
AGCAAAATGTGTATAGATCAATAGGGAAATCTCAAAGGGATGAGAAGCAC
TTTAAATGTTCAACAAACTTAGCCATCAGGGAAATGGAAATAAAAACCAC
TTGGTGATTCCAACTTATACCTGTCAGAATGGCTAAGATCAATATCACAA
GAGACAGCTCATGTTGTATAGGATGAAAACCAAAGAGAACACTCCTCCAT
TGTTGTTGGGAGTGTAACCTTGTATAGCCACTATGGAAATCAATATGGTG
ATTCCTCAGAAAATTGGGGAATGATTTATATCATGACCCAACTTTATTAC
AATGTGTCTCTACACATGCTTTGTATTTACTTGAGATCCACTGAGATTCA
TGTCTATATCTTTCTTTGTCAAGATTTTCACATTCCCATCTAATATTCCT
TTAAATAAACCTCTCTTTCTGTTTCTCCACCACTGTCCCTTACTCTATCC
CTCTCCTTTCTGAGACACTCCTTTGCCATATATCAATGTGCTTGATGATA
CCTCCGGTTTCAGGTATACCTTTTCCTTACTTCATAGTGTTTGCTCATCT
TTCTTTGTGTTTATCTAATTGGCTAN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATTAAAACACTAAACTGGAAGGAATAATCATTA
TATATATGATTATTATGATATATGGCATACCATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATGCC
TAGATAGCTGTGGGTATATAAGAGATATATATATAATATATAAATAATAT
ATATAATATATAACTAACATAGACATATTTTATAAATATAAAGTAAAACA
AAAATAAAAATGAGATTTTTTTTAAAAGAAAATAAATGAAGATCCCTGAC
ATGGCATTATGAAAAAAGGGAACCTCCTAAGATGCCATTGAGTTAATTTT
CTGTTAGCCATCTACTGCTAGGCATTCAACCTACCCTTAAGAATAATTTG
TTTCCCTAGTGAGATTCACTTGAAGAAAATGAAAGAAAATATCATTTGCA
AGTGGATACCAATTGGAGATTGCTTCTGAGTTAGGAATAGGATCAACTAT
TCACTTTTTTTCAGTTCTACAAAGACAACTGACACAGATTCCTGCAGGAC
CAGTTTGACTCATTCTCCATGAGTTCATATGAGCAATGGTCCTGTTCATT
TAGAAGACCATCTTTTCTTTGTGCCTTCCATCCCCTCTGGATCTCATATT
CTTTCTGCCTCCTCTTCCAAGGCTCCCTAAACCCAGAATATAGGGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_g11.b1 MSMg01no420_g11.b1 CHROMAT_FILE:
MSMg01no420_g11.b1 PHD_FILE: MSMg01no420_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:14 2005
         (624 letters)



>mm_chrX_107609115_107610138
          Length = 1024

 Score =  783 bits (405), Expect = 0.0
 Identities = 432/441 (97%), Gaps = 2/441 (0%)
 Strand = Plus / Minus

                                                                        
Query: 185  ttggtgattccaacttatacctgtcagaatggctaagatcaatatcacaagagacagctc 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1024 ttggtgattccaacttatacctgtcagaatggctaagatcaatatcacaagagacagttc 965

                                                                        
Query: 245  atgttg-tataggatgaaaaccaaagagaacactcctccattgttgttgggagtgtaacc 303
            ||| ||  | ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 964  atgctgaca-aggatgaaaaccaaagagaacactcctccattgtttttgggagtgtaacc 906

                                                                        
Query: 304  ttgtatagccactatggaaatcaatatggtgattcctcagaaaattggggaatgatttat 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  ttgtatagccactatggaaatcaatatggtgattcctcagaaaattggggaatgatttat 846

                                                                        
Query: 364  atcatgacccaactttattacaatgtgtctctacacatgctttgtatttacttgagatcc 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  atcatgacccaactttattacaatgtgtctctacacatgctttgtatttacttgagatcc 786

                                                                        
Query: 424  actgagattcatgtctatatctttctttgtcaagattttcacattcccatctaatattcc 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  actgagattcatgtctatatctttctttgtcaagattttcacattcccatctaatattcc 726

                                                                        
Query: 484  tttaaataaacctctctttctgtttctccaccactgtcccttactctatccctctccttt 543
            ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 725  tttaaataaacctctctttctgtttctccaccactgttccttcctctatccctctccttt 666

                                                                        
Query: 544  ctgagacactcctttgccatatatcaatgtgcttgatgatacctccggtttcaggtatac 603
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 665  ctgagacactcctttgccatatatcaatgtgcttgataatacctccggtttcaggtatac 606

                                 
Query: 604  cttttccttacttcatagtgt 624
            |||||||||||||||||||||
Sbjct: 605  cttttccttacttcatagtgt 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)