BAC Information

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BAC

Clone NameMSMg01-421P19
ChromosomeX (Build37)
Map Location 85,667,722 - 85,815,467
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667876, EG667883
Downstream geneLOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2, EG629419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421P19.T7 (MSMg01no421_p19.b1)MSMg01-421P19.TJ (MSMg01no421_p19.g1)
ACCAG516485AG516486
length769800
length of high quality
(start - end)		531 (48 - 578)410 (80 - 489)
definitionCHROMAT_FILE: MSMg01no421_p19.b1 PHD_FILE: MSMg01no421_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:20 2005CHROMAT_FILE: MSMg01no421_p19.g1 PHD_FILE: MSMg01no421_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,667,722 - 85,668,247)(85,815,167 - 85,815,467)
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCG
CGGAATTCAGTCTCTTTCGCAGGTACATCCTAGATGTAGTCTGTGAACAA
ATAAAAATGGGCAATTTTGTAAATGAATTTTAGTTTGGCTAATAAAGATT
CTCAATTCTCATTTGCATGCTAAAATCTTAAATAGCATTAAAAAATAACC
CTTTTTCATTTTTGAAAAACCCAGGATTTCCAAATTTGACAATGGAATCA
TTTTTTAACATGCAACACATTACCATTTTAAGGAAATGTTAAAACTTTGA
TAGAGTTTCTAATAAGAAGAAGACATTTTCTGAATATTGCTTCAATAATG
CTGATTTAGTGGTAGATGCTTGAAATTATCCCAAATTAAGAAGAGATGAA
CAAACAAAGCTACTTAATAAATGATTCATCAAAATAGTCATTCTTTACAT
GAAAAATGTTTGGAAAATTTAACACTTTTGAGCTACCGGAAACAGTTTGT
AAGGATTTTTGGTTGAAATGGTCCCCTAAGATAGTCTAACTTTTACACAA
AACAGACAGTAAGTAAGCAATAAATGTGGGAGCTGAAATCAAAAGTCTAC
AGTTGTGATCATCATACTTGTAATTCCTAAAATAATGGCCCAGCTTAAAC
GGTGAGGTATTCAACAGAATCTTTTAAAGCCCCTTCCTTCTTGGCATTGA
AACTGATAAAATATAAATTTCAAATTTTAATGCGATCCCCAAAATTCACT
ATTAACCACCCCTGCCGGA

NCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAAATGGAGAAATAGTCC
TGGTTGCAGTTAAAGAAAGGGATGTGAAAACAGATCAGAGCCAGAAGAGC
TTTGAAAATAGGAGTAGGGTGTTGAGTTATTTAATGAGAATATCCTTGAA
GGACTGAAGAGAAGATGGGGATCAATTTTTCCACTGGAGTCCACAAGGAC
CTGAGACCTGCTAACACTTTTAATTTCATCTACTGGAACCAGTATTAGTC
TTCTGACCTCTAAAAGTAGAAATTAATATATTTGGATTGTTTTAAGCCAC
CAACCCTATAATAATTGTTATATAATTAATAAAAAGCTTTAATAGAAAAT
TGATGAAAGCAGTAGAAAGATTGTCTTCACTTTTCTGCCAATTCATCAAA
CTTCAATTCACTCTGGGGTGTTACAGGGAAGGATAGAGGATTTCTGAATA
TACAGTGGAAAATTTTCTGGAGTTGCCTAGACGTATTTTTCTTAAAGGCA
TGTTATATATGTTCCAGTTGTTCCTCAAAACTCCTTTCCCCCAATGGGTT
TTCTCTCTTTCTGTCTTCTTTTTCTTTGTTCTCCCTCTCCTCTTTTTATC
CTCCGCCGCCCTCCTAATCCTTCTTCATTTTTTTTACGTCTTTTGTTTCG
CCCCGTCTCTTCCCCTTCCTCCCTTTTTCTTTTTTTCCTTTTTTGTTCGT
TTTCCCATTTTCTCTTTTTTTTATTTTTACCTTTTCACTTATTTAATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_p19.b1 MSMg01no421_p19.b1 CHROMAT_FILE:
MSMg01no421_p19.b1 PHD_FILE: MSMg01no421_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:20 2005
         (531 letters)



>mm_chrX_85667517_85668447
          Length = 931

 Score =  955 bits (494), Expect = 0.0
 Identities = 518/526 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcagtctctttcgcaggtacatcctagatgtagtctgtgaacaaataaaaatgggc 65
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcagtctcttttgaaggtacatcctagatgtagtctgtgaacaaataaaaatgggc 265

                                                                       
Query: 66  aattttgtaaatgaattttagtttggctaataaagattctcaattctcatttgcatgcta 125
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 aattttgtaaatgaattttagtttggttaataaagattctcaattctcatttgcatgcta 325

                                                                       
Query: 126 aaatcttaaatagcattaaaaaataaccctttttcatttttgaaaaacccaggatttcca 185
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaatcttaattagcattaaaaaataaccctttttcatttttgaaaaacccaggatttcca 385

                                                                       
Query: 186 aatttgacaatggaatcattttttaacatgcaacacattaccattttaaggaaatgttaa 245
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 386 aatttgacaatggaatcattttttaacatgcaacacataaccattttaaggaaatgttaa 445

                                                                       
Query: 246 aactttgatagagtttctaataagaagaagacattttctgaatattgcttcaataatgct 305
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 446 aactttgatagagtttctaataagaagaggacattttctgaatattgcttcaataatgct 505

                                                                       
Query: 306 gatttagtggtagatgcttgaaattatcccaaattaagaagagatgaacaaacaaagcta 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gatttagtggtagatgcttgaaattatcccaaattaagaagagatgaacaaacaaagcta 565

                                                                       
Query: 366 cttaataaatgattcatcaaaatagtcattctttacatgaaaaatgtttggaaaatttaa 425
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 566 cttaataaatgattcatcaaaatggtcattctttacatgaaaaatgtttggaaaatttaa 625

                                                                       
Query: 426 cacttttgagctaccggaaacagtttgtaaggatttttggttgaaatggtcccctaagat 485
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 626 cacttttgagctaccggaaacagtttgtaaggattcttggttgaaatggtcccctaagat 685

                                                         
Query: 486 agtctaacttttacacaaaacagacagtaagtaagcaataaatgtg 531
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agtctaacttttacacaaaacagacagtaagtaagcaataaatgtg 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no421_p19.g1 MSMg01no421_p19.g1 CHROMAT_FILE:
MSMg01no421_p19.g1 PHD_FILE: MSMg01no421_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:20 2005
         (410 letters)



>mm_chrX_85814658_85815467
          Length = 810

 Score =  559 bits (289), Expect = e-163
 Identities = 298/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 110 aatatccttgaaggactgaagagaagatggggatcaatttttccactggagtccacaagg 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 aatatccttgaaggactgaagagaagatggggatcaatttttccactggagtccacaagg 751

                                                                       
Query: 170 acctgagacctgctaacacttttaatttcatctactggaaccagtattagtcttctgacc 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 acctgagacctgctaacacttttaatttcatctactggaaccagtattagtcttctgacc 691

                                                                       
Query: 230 tctaaaagtagaaattaatatatttggattgttttaagccaccaaccctataataattgt 289
           ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||
Sbjct: 690 tctaaaagtagaaattaatataaatggattgttttaagccaccaaacctataataattgt 631

                                                                       
Query: 290 tatataattaataaaaagctttaatagaaaattgatgaaagcagtagaaagattgtcttc 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tatataattaataaaaagctttaatagaaaattgatgaaagcagtagaaagattgtcttc 571

                                                                       
Query: 350 acttttctgccaattcatcaaacttcaattcactctggggtgttacagggaaggatagag 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 acttttctgccaattcatcaaacttcaattcactctggggtgttacagggaaggatagag 511

            
Query: 410 g 410
           |
Sbjct: 510 g 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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