BAC Information

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BAC

Clone NameMSMg01-422G18
ChromosomeX (Build37)X (Build37)
Map Location 71,839,933 - 71,840,46672,007,551 - 72,007,783
singlet/doubletsingletsinglet
Overlap geneOlfr1325
Upstream geneDusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1
Downstream geneEG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422G18.T7 (MSMg01no422_g18.b1)MSMg01-422G18.TJ (MSMg01no422_g18.g1)
ACCAG516815AG516816
length747760
length of high quality
(start - end)		538 (37 - 574)236 (66 - 301)
definitionCHROMAT_FILE: MSMg01no422_g18.b1 PHD_FILE: MSMg01no422_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:52 2005CHROMAT_FILE: MSMg01no422_g18.g1 PHD_FILE: MSMg01no422_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:52 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,839,933 - 71,840,466)(72,007,551 - 72,007,783)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
TATTTCTTCTCCACTATCTCCTACAGCTCCTGTTTTACCCAGCTTGCTTT
CAGGGCTTTCTTAGCACTGGCCGAATGTTTTCTGCTTGCCATTATGGCTT
ATGACAGATTTGTAGCTATTTCAAATCCACTCAGGTATAATCTGGTTATG
TCTTCTCGAGTATGTATTTTCATGGCTTTGCTTGCCTGGATAGCAGCCCT
TCTTCTCACTGTTCTGCCCATTCTAATCTTTCCAATCAGTTTCTGTGGGC
AGAATGTAGTCAATCATTTCTCCTGTGAGGTTCAAGCCATCTTCAAATTG
CTCTGTTCTAATACCATTTCTTTACAGATTATGATGATAGCTTGTGCTGT
CATTTCAATGCCAGTACCTTTAATGTTCATTCTTTTCTCTTACCTTTGCA
TCCTCAAGGCTGTTTTAAGAATCCATCCAACTAAGGCCAGGCTTAAAGCC
TTTTCTACATGTGCCTCTCACTTGATTGTGGTTACTATCTACTTTGGCAC
ACTAATATATATTTATATGAGACCACAGAGCANAATATCTCACAATGGGG
ACAAAATTGTCTCAATATTTTATGCAGCAGTGACACCAATGCTAAATCCA
CTCATCTATACCCTAAAAAATAANGAAGTGAAAGCTGTTCTCAAGAGGGA
AATTTGTGGGGGCAAGGCCTAATGCCTCAAGTACACACAGCTTAATG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTCTCAAGGTGGCTAAGAAAAGGTGCTAGCAGCA
GGGAGAAATGAAAAAGAAGGAATGAAGAAGAGTGTTTCTTAGGGTATAAG
CCACCAGCTCATTGTGGTGTATATCTGAGCAGAAAAGCTTTAGTAATGCA
TCCAGGTCATAGAAAATATGGGGAATTCTGAGCATTGCACAGAAAGATAA
CGCACCCCTAGTAGGGGTGAGTGGGTAGGGGAATAAAGAGATGTTTACNN
NCTCNTANNCNCTTTTTTTTTTTTAGANANANAANNNANGNNNATANCAG
AGGNNATTTACTACTGATCCACCATATTCTATCGCTGTCCAGTAGACATT
GTCCACTTCTAGAAATAAACATGATAATGCATTTAAGAAGGCTCCTGTCA
TAGGANATGGCCTTGTTCTGGGTTTGGATGCGTAACAACATCTTTATTAC
TGCGACCGAGGTTAAGCATATATCCCCTTACGGATACTGGGTTTCTGATG
CAGCGCCTGTCCCTAGTTCCGGTGTCCTTCTTTTTTTTCCTTTCTCAATT
TGTTTTTCCTTTGATTTGGTATTGATTTCCTCTATTGTTTGTCTGTTATT
CCTTTTGTTTTTTTTTTTTTTTCTCTCAGCCCACTTTCTTCCATTCTCGT
ATTTTAATTCACCTGTTGTTTTACCGTTTCTTCCTTCCCTTCTCTACCTC
CTTATACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_g18.b1 MSMg01no422_g18.b1 CHROMAT_FILE:
MSMg01no422_g18.b1 PHD_FILE: MSMg01no422_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:52 2005
         (538 letters)



>mm_chrX_71839729_71840666
          Length = 938

 Score = 1002 bits (518), Expect = 0.0
 Identities = 530/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgtatttcttctccactatctcctacagctcctgttttacccagcttgcttt 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgtataacttctccactatctcctacagctcctgttttacccagcttgcttt 264

                                                                       
Query: 65  cagggctttcttagcactggccgaatgttttctgcttgccattatggcttatgacagatt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 cagggctttcttagcactggccgaatgttttctgcttgccattatggcttatgatagatt 324

                                                                       
Query: 125 tgtagctatttcaaatccactcaggtataatctggttatgtcttctcgagtatgtatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtagctatttcaaatccactcaggtataatctggttatgtcttctcgagtatgtatttt 384

                                                                       
Query: 185 catggctttgcttgcctggatagcagcccttcttctcactgttctgcccattctaatctt 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catggctttgcttgcctggatggcagcccttcttctcactgttctgcccattctaatctt 444

                                                                       
Query: 245 tccaatcagtttctgtgggcagaatgtagtcaatcatttctcctgtgaggttcaagccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccaatcagtttctgtgggcagaatgtagtcaatcatttctcctgtgaggttcaagccat 504

                                                                       
Query: 305 cttcaaattgctctgttctaataccatttctttacagattatgatgatagcttgtgctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttcaaattgctctgttctaataccatttctttacagattatgatgatagcttgtgctgt 564

                                                                       
Query: 365 catttcaatgccagtacctttaatgttcattcttttctcttacctttgcatcctcaaggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catttcaatgccagtacctttaatgttcattcttttctcttacctttgcatcctcaaggc 624

                                                                       
Query: 425 tgttttaagaatccatccaactaaggccaggcttaaagccttttctacatgtgcctctca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgttttaagaatccatccaactaaggccaggcttaaagccttttctacatgtgcctctca 684

                                                                 
Query: 485 cttgattgtggttactatctactttggcacactaatatatatttatatgagacc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttgattgtggttactatctactttggcacactaatatatatttatatgagacc 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no422_g18.g1 MSMg01no422_g18.g1 CHROMAT_FILE:
MSMg01no422_g18.g1 PHD_FILE: MSMg01no422_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:52 2005
         (236 letters)



>mm_chrX_72007351_72007986
          Length = 636

 Score =  451 bits (233), Expect = e-131
 Identities = 233/233 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctcaaggtggctaagaaaaggtgctagcagcagggagaaatgaaaaagaaggaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctcaaggtggctaagaaaaggtgctagcagcagggagaaatgaaaaagaaggaatga 260

                                                                       
Query: 61  agaagagtgtttcttagggtataagccaccagctcattgtggtgtatatctgagcagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagagtgtttcttagggtataagccaccagctcattgtggtgtatatctgagcagaaa 320

                                                                       
Query: 121 agctttagtaatgcatccaggtcatagaaaatatggggaattctgagcattgcacagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctttagtaatgcatccaggtcatagaaaatatggggaattctgagcattgcacagaaa 380

                                                                
Query: 181 gataacgcacccctagtaggggtgagtgggtaggggaataaagagatgtttac 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataacgcacccctagtaggggtgagtgggtaggggaataaagagatgtttac 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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