Query= MSMg01no422_j01.b1 MSMg01no422_j01.b1 CHROMAT_FILE:
MSMg01no422_j01.b1 PHD_FILE: MSMg01no422_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:02 2005
(644 letters)
>mm_chrX_108862681_108863724
Length = 1044
Score = 1172 bits (606), Expect = 0.0
Identities = 630/640 (98%), Gaps = 8/640 (1%)
Strand = Plus / Minus
Query: 9 gaattctactttctgtc-taatacctatgagtgtagatttcaattatgactcttccccaa 67
||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gaattctac-ttctg-cataatacctatgagtgtagatttcaattatgactcttccccaa 787
Query: 68 aattttgttcacagatgagtatataatgctcttagcctaattttacctaatggatcaact 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aattttgttcacagatgagtatataatgctcttagcctaattttacctaatggatcaact 727
Query: 128 aatttaatcaattatcactctatttaataagacagaagtgccggggaatagagccccatg 187
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 726 aatttaatcaattatcactctatttaataagacagaagtgcaggggaatagagccccatg 667
Query: 188 gtttttgcatacctatgttctatttacacatcggtgcaaaatgtaatattacaaacagaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gtttttgcatacctatgttctatttacacatcggtgcaaaatgtaatattacaaacagaa 607
Query: 248 aacctttattaacaaaacttttttgtacttgaagaatctttttatctttgacattatatg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aacctttattaacaaaacttttttgtacttgaagaatctttttatctttgacattatatg 547
Query: 308 cttcagctaatggacctaaattggccacttctaagttgtctattacaatgtgtcattggg 367
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cttcagctagtggacctaaattggccacttctaagttgtctattacaatgtgtcattggg 487
Query: 368 aaagg---aaaaaaaaacattgatatgtgtcagttttgtactttgtagatagtatagtct 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaaggaaaaaaaaaaaacattgatatgtgtcagttttgtactttgtagatagtatagtct 427
Query: 425 cagtaatatggaaaatttgacagcagtatagatggcaacttgcttccacttcacaaaaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cagtaatatggaaaatttgacagcagtatagatggcaacttgcttccacttcacaaaaca 367
Query: 485 agattttattgcccatattaacatgtaattcatccatactacatgaataaaatcagaata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agattttattgcccatattaacatgtaattcatccatactacatgaataaaatcagaata 307
Query: 545 cattcataaatgatgattcattggggtaaatttatatgttatagatttccaagaaattat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cattcataaatgatgattcattggggtaaatttatatgttatagatttccaagaaattat 247
Query: 605 caagcctataattaaaaaaaaatcactactgttctcagat 644
||||||||||||||||||||| |||||||||||||||||
Sbjct: 246 caagcctataattaaaaaaaa--cactactgttctcagat 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_j01.g1 MSMg01no422_j01.g1 CHROMAT_FILE:
MSMg01no422_j01.g1 PHD_FILE: MSMg01no422_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:02 2005
(566 letters)
>mm_chrX_108700461_108701426
Length = 966
Score = 1056 bits (546), Expect = 0.0
Identities = 561/566 (99%)
Strand = Plus / Plus
Query: 1 aatgtagaaaagtttaaaaatgctgtagcctccccctaatgaatttatataaacaaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtagaaaagtttaaaaatgctgtagcctccccctaatgaatttatataaacaaaccc 260
Query: 61 ttgagaaatggtattaaaattatttacagagacaaaataatttattcaattactttctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagaaatggtattaaaattatttacagagacaaaataatttattcaattactttctca 320
Query: 121 tcaactgcttgctaaacatccaggtgcaagggtctcccaaccaagtaatacagaggtaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaactgcttgctaaacatccaggtgcaagggtctcccaaccaagtaatacagaggtaat 380
Query: 181 taaaatacatttctgccttcaagaaacttatgttgaatatgcttaagaaattaaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaatacatttctgccttcaagaaacttatgttgaatatgcttaagaaattaaaaaaaa 440
Query: 241 aacaaaccttcacccctaacaatggtgtgtatatttaaatagagtaaagcaatttttttc 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 441 aacaaaccttcacccctaacaatggtatgtatatttaaatagagtaaagcaattttcttc 500
Query: 301 aagatttctaaactggcatgttctacaccacaatatgcaatggcaactccaggcacaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagatttctaaactggcatgttctacaccacaatatgcaatggcaactccaggcacaaag 560
Query: 361 ttctcagatggtaaatggaagcattttaaaataatgtgtataaaaatatatattctctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctcagatggtaaatggaagcattttaaaataatgtgtataaaaatatatattctctct 620
Query: 421 atatgagcaaatagaattcaaggaaaaatgtttaaatatgatagagatgattataaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatgagcaaatagaattcaaggaaaaatgtttaaatatgatagagatgattataaagaa 680
Query: 481 tgttcctaatgacatattgtgggatcccttgttctcacaatagttgccacaactgaaaat 540
|||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 681 tgttcctaatgacatattatgggatctcttgttctcacaatagttcccacaactgaaaat 740
Query: 541 actaggtcactaaactgtcttttaga 566
||||||||||||||||||||||||||
Sbjct: 741 actaggtcactaaactgtcttttaga 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
