BAC Information

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BAC

Clone NameMSMg01-423P21
ChromosomeX (Build37)
Map Location 33,295,031 - 33,295,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074, LOC100039585, LOC100039497
Downstream geneEG210457, Dock11, Il13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983, Slc25a43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423P21.T7 (MSMg01no423_p21.b1)MSMg01-423P21.TJ (MSMg01no423_p21.g1)
ACCAG518017AG518018
length785791
length of high quality
(start - end)
513 (30 - 542)431 (57 - 487)
definitionCHROMAT_FILE: MSMg01no423_p21.b1 PHD_FILE: MSMg01no423_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:49 2005CHROMAT_FILE: MSMg01no423_p21.g1 PHD_FILE: MSMg01no423_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGCTCATAC
CGAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGT
AAATGGTGAGAAGCTGGAAGCAAACCCACTGAAATCAGGGACTAGACAAG
GCTGCCCACTTTCTCCCTACCTATTCAACATTGTACTTGAAGTCCTAGCC
AGAGCAATTAGACAACAAAAGGAGATCAAGTGGATACAAATTGGAAAGGA
AGAAGTCAAAACATCACTTTTTGCAGACGATATGATAGTATATATAAGTG
ACCATAAAAATTCCACCAGAGAACTCCTAAAACTGATAAACAGCTTCGGT
GAAGTGGCTGGATATAATATTAACTCAAACAAGTCAATGGCCTTTCTCTA
CACAAAGAATAAACAGGCTGAGAAAAAAATTAGGGATACAACACCCTTTT
CAATAGTCACAAATAATATAAAATACCTTGGTGTGACTCTAACTAAGGAA
GTGAAAGATCTGTATGAAAAGAACTTCAAGTCTCTGAAGAAAGAAATTAT
AGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTAGCAGGA
TCAATATAGTAAAAATGGCTATCTTGCCCAAAGCAATCCACCGAATCAAT
GGCACCCCCCATCAAAATTCCACTCCATTTCTTCTCCGAATTAAAAAAAG
AAACCGCGAATCTTTTTGGGAAAACAAAAAACCTCGGATAGGAAAAACTC
TTCTCCGGTAAAAAAACCCGGCGGGAAACCTACCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCATAAATTTCCTGAGGCTGGGAAAGTAGTAGTCACCTTTTCA
CCTGAAGACAATTTCTGAAACCCTTTATCTGTTATGGAAAGTCCTAATGA
GCCCATTTGTGATGGGGTAAATTTCACAGACTCCTGTCCATAGAGATGGA
AGTTTTGAGAATTTCCTGGGAAAATGTTAGTGGTCCCAGTATCACCCGGT
CATATATGGAAGGACCCAAAACACCTTGGACAAATGTTAAAAGGTCAGTG
TCTCTTGGTCAGATGCTAAAGCTTCTAGAGAACAAGGCAGATTCTGAAGA
TTTGTAAGCATCTTGTGAAGATGCCAAAGGTCTTGATGTCTCTAGGGTAA
ATTGGGAAGGATCCAGATTCCCTTCCATAAGAGCCTTAATTCCTAGAATA
TATATTCAGCAGGTAGTGATGGTTCCATTGTCCCTTCGGTAGATGATGGT
GTTTCTCAAGCAACTTGAGTAGAACCTGATGTTCCTAGAATTCCTTCTGA
AAATTAAAAAATTCCTAAACTTCCTAGAGCAGATGATGAATAAGTTAAAG
CCCTCCTTGGCTACCAAAGGGTCCTAGATATACTTGGGAAAAAATGGACT
TTTTCGGATAACCCTGAACATGATTTTGGAAGGCCACAAAATTCCTTGGG
AGGGGGCCTAAATTCTTCTTAAACCCTCGTGGCAAAAATGAATCCTCCCC
ATATAATTTTTTGTGTGGAGAAAAGAACCTCTATAAACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_p21.g1 MSMg01no423_p21.g1 CHROMAT_FILE:
MSMg01no423_p21.g1 PHD_FILE: MSMg01no423_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:49 2005
         (431 letters)



>mm_chrX_33294831_33295661
          Length = 831

 Score =  818 bits (423), Expect = 0.0
 Identities = 429/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcataaatttcctgaggctgggaaagtagtagtcaccttttcacctgaagacaatttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcataaatttcctgaggctgggaaagtagtagtcaccttttcacctgaagacaatttct 260

                                                                       
Query: 61  gaaaccctttatctgttatggaaagtcctaatgagcccatttgtgatggggtaaatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaccctttatctgttatggaaagtcctaatgagcccatttgtgatggggtaaatttca 320

                                                                       
Query: 121 cagactcctgtccatagagatggaagttttgagaatttcctgggaaaatgttagtggtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagactcctgtccatagagatggaagttttgagaatttcctgggaaaatgttagtggtcc 380

                                                                       
Query: 181 cagtatcacccggtcatatatggaaggacccaaaacaccttggacaaatgttaaaaggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtatcacccggtcatatatggaaggacccaaaacaccttggacaaatgttaaaaggtc 440

                                                                       
Query: 241 agtgtctcttggtcagatgctaaagcttctagagaacaaggcagattctgaagatttgta 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtctcttgggcagatgctaaagcttctagagaacaaggcagattctgaagatttgta 500

                                                                       
Query: 301 agcatcttgtgaagatgccaaaggtcttgatgtctctagggtaaattgggaaggatccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcatcttgtgaagatgccaaaggtcttgatgtctctagggtaaattgggaaggatccag 560

                                                                       
Query: 361 attcccttccataagagccttaattcctagaatatatattcagcaggtagtgatggttcc 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 attcccttccataagagccttaattcctagaatatatattcagcaggtggtgatggttcc 620

                      
Query: 421 attgtcccttc 431
           |||||||||||
Sbjct: 621 attgtcccttc 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)