CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCAAGTACCTATCACTTTTGGACTCCTCTAAGCCTAGGCAAAGAG
GGCCCTGGAAGCTGGGGTGGGAGGTTCCAGCCAAAACAACACAGGTGTTA
GCGATTTGGAACCAGGCTGGCCTGGGTAGAAATGATTCTTGCAATCCTTA
TCAAGGATTACATTCTTGTCATATGCTCAAGTGAAATCTAAACCTTCTCA
ACTGCACTGAAAATGTCTTCTACAGCTGATTTGGGCTAGATTCAATCCAA
ATTCACGCCTTGGTCTGTGTATAGCCCTTCTATTTCTAGAACTTGAGGAT
CACTTTTTCCCCCTATTTTTCAATATGCCAACTAAAGAAAACAGATTAGT
TGTTCTGAAAGATGGTCCACTTTTTAGACTGCCCAGATACTTGGTGGTTT
GTTAACCTCATAAATTCCCTTGAAAATTGGAATTTAGGCAGGAAGACTTG
ATACATTCAAGTTAAATACCACTGGCTAAAATACATCAGCACAGCATGTA
TTGAATACTGCACAACACCTGAAGACACATAATGGTATGCGGNTGCCTCC
ATTTATAACATCATACCTGACCGTTACATCAGCACAATGGCAGCAAAATC
ATTCGTACAATTGCTTTTGTGTGTGTGAGAGAGAAAAAAAAGAGTGAGTG
TGTGAATGTGTGANTTGTTTTTTNTNNNTNNTTTTNNTNTNTTTTTTTTN
T

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACCAAAGAATTAAAGCC
ACAGGCAGAAAATAACAGGCTTGAGGCCAGGATGCATACAGAGGTTAGAC
GTAGAGTAAGGGAAGAGAAGGAAGTGAGGTGTCTCCTTAGAAAGGAGACA
GAGAATATATAATTATGGAGAGACAGAAGAAAGACTGGAACAGGAGGATA
AAATAGGGAAAGGGAAGGAAGAGGAGGGTAGGGGAAAATACAAGGAGGGA
TAACTAACACTAAAGATCATCTGAGGGTCTTATAGAAACCTACTATAGTA
GAAGTTTCTTAAAATATATGCATCTAGGGGAGAAATATAAAAGCAGTTAT
CAAATAAGGGGGGAGGCAGTGCCCCAATTAGATATCTTTCATCAAGTGAA
ACCTCCAGTACCAGGAATGGATTACGTCTACTTGAGTGATTGGCCAAAGA
GGGTCCTGTGGGAACCCCCAAACAACCTAGGCTATTGCCAAGGCTATTGG
TTACTCTCTACAAACTGATGGTAAGACGGTAAGGCTCTATTGCTGAAGAC
ACACTTTTTTTTTTTTTTTTGGCTTCTCGAGATAGGGTTTCTCTGTGTTT
CCCTGGACGTCCTGGTTCTCTTTCTTTATACCATTTCGTCCTTTTATCCC
TTTATCCGCCGCCTTCGTCCTCCATGTTTTGTGCCTCTTGTCCGGG

Query= MSMg01no424_f07.b1 MSMg01no424_f07.b1 CHROMAT_FILE:
MSMg01no424_f07.b1 PHD_FILE: MSMg01no424_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:16 2005
         (599 letters)



>mm_chrX_136720448_136721443
          Length = 996

 Score = 1033 bits (534), Expect = 0.0
 Identities = 579/597 (96%), Gaps = 7/597 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaagtacctatcacttttggactcctctaagcctaggcaaagagggccctgg 64
           |||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcttcaagcacctatcacttttgaactcctgtaagcctaggcaaagagggccctgg 264

                                                                       
Query: 65  aagctggggtgggaggttccagccaaaacaacacaggtgttagcgatttggaaccaggct 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagctggggtgggaagttccagccaaaacaacacaggtgttagcgatttggaaccaggct 324

                                                                       
Query: 125 ggcctgggtagaaatgattcttgcaatccttatcaaggattacattcttgtcatatgctc 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 ggcctgggtagaaatgattcttgcaatccttatcaaggattacatccttgtcatatgctc 384

                                                                       
Query: 185 aagtgaaatctaaaccttctcaactgcactgaaaatgtcttctacagctgatttgggcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtgaaatctaaaccttctcaactgcactgaaaatgtcttctacagctgatttgggcta 444

                                                                       
Query: 245 gattcaatccaaattcacgccttggtctgtgtatagcccttctatttctagaacttgagg 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 445 gattcaatccaaattcacgccttggtctgggtatagcccttctatttctagaacttgaga 504

                                                                       
Query: 305 atcactttttccccctatttttcaatatgccaactaaagaaaacagattagttgttctga 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 atcactttttccccctatttttcaatatgctaactaaagaaaacagattagttgttctga 564

                                                                       
Query: 365 aagatggtccactttttagactgcccagatacttggtggtttgttaacctcataaattcc 424
           |||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 565 aagatgatccactttttagactgcccagatacttggt---ttgttaacctcataaattcc 621

                                                                       
Query: 425 cttgaaaattggaatttagg--caggaagacttgatacattcaagttaaataccactggc 482
           |||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cttgaaaattggaattt--gtacaggaagacttgatacattcaagttaaataccactggc 679

                                                                       
Query: 483 taaaatacatcagcacagcatgtattgaatactgcacaacacctgaagacacataatggt 542
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taaaatacatcagcacagtatgtattgaatactgcacaacacctgaagacacataatggt 739

                                                                    
Query: 543 atgcggntgcctccatttataacatcatacctgaccgttacatcagcacaatggcag 599
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atgcggttgcctccatttataacatcatacctgaccgttacatcagcacaatggcag 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 996
Length adjustment: 10
Effective length of query: 589
Effective length of database: 986
Effective search space:   580754
Effective search space used:   580754
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)