BAC Information

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BAC

Clone NameMSMg01-424P14
ChromosomeX (Build37)
Map Location 53,269,712 - 53,270,120
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424P14.T7 (MSMg01no424_p14.b1)MSMg01-424P14.TJ (MSMg01no424_p14.g1)
ACCAG518767AG518768
length742732
length of high quality
(start - end)
590 (64 - 653)360 (82 - 441)
definitionCHROMAT_FILE: MSMg01no424_p14.b1 PHD_FILE: MSMg01no424_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:03 2005CHROMAT_FILE: MSMg01no424_p14.g1 PHD_FILE: MSMg01no424_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGA
ATTCCCACTTTCACATCCTATTCAGATTTCTCTCTCTTTATCTATTTTTT
TCTTGCTGTAGTGGTGGTGATTTTTTAAGAGAGCCTTATAAGAATTAATT
TACTCTTAGATGAATTTGGACCTTTTGAGAAAGATTGTATTCCTACACCA
TTTTTCGCTCATGAGAAAATGGGGAAGTGGTACATGGCTTAGAGTATAAG
ATCATTGGCCCCTGTGCACAGGTTCCAGGATTCAATTACCAGGGCCCATC
TTGTTTGTCACAGCCTTTTGGTAAGTGCTGTTTCAGGGGATCTAATACTA
TCTAACTTCTGATCTCTACACGGTCCAGTTTAGTGCACAGGCAGCAGACA
CACCCCTTCAGGTAAAACATTCATAAAATAGAAATAATGAAAATTCTACA
GTTTACCAATTGCCATATAAAACTTGATTTCCAAATGATCACACATACTA
TTAGGAGAGGACCTCAAAATGTGGATGTAGGTCAAAAATTTTGATATATT
TGATACTTATTTTTTCTTTCTTTTCTGTTTTACACCACCTAGGACCCCAC
ATCCCAATGACCTGGAGGAGAGTAAGCCAGAGTTCTTCCATAGNCTTTGC
TTCAGTTCCTGCCTCCACTTACCAGCTCTGATTAAGGTGTTGTCCAGACT
TCCCTAGATACACAGTTTAAAACCTGAAAGTTGAAAACAGAA
CTTTTACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATAGACTGGACCAGAA
AAGAAATTCCTCCTGACACATAATAATCAGAAGAAGAAATGCACTAAATA
GAGATATACTGTTAAAAGTAGTAAGGGAAAAAGGTCAGGTAACATATAAA
GGCAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGA
CAGAATATCCTGGACAGATGTTATACAGATACTAAGAGAACACAAATGCC
AGCCCAGGCTATTAAACCCAGCCAAACTCTCAATTACCACAGATGGAGAA
ACCAAAGTATTTCACGATAAAAAACAAATTCACACATTAACTTTCCATGA
ATCCAGCCTTTCAAAGAATAATAACAGAAAAAAAAAAAATCAATACAAGG
ACAGGAACAACGCCCTAGAAAAAGCTAGAAAGTAATCCCTCAACAAACCA
AAAAGAAGACAGCCACAAGAACAGATTGCAAACTCTAACAACAAAAATAA
TCGAAGCAACAATTACATTTCCTTAATATCTCTTCATATCAATGGATTCA
GCTCCCCAATAAAAAGATATAGACTGGCTATTAAAACAGGATCCAATAGT
CTGCTGTTTACAGGATACCCATCTCAGGTAATAAGACAGACACTGTCCTC
ATAGTGATAGGTTAGAAAATAATTTTCCAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_p14.b1 MSMg01no424_p14.b1 CHROMAT_FILE:
MSMg01no424_p14.b1 PHD_FILE: MSMg01no424_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:03 2005
         (590 letters)



>mm_chrX_53269138_53270127
          Length = 990

 Score =  265 bits (137), Expect = 6e-75
 Identities = 347/429 (80%), Gaps = 35/429 (8%)
 Strand = Plus / Minus

                                                                       
Query: 148 atgagaaa--atggggaag-tgg-tacatggcttaga-gtataagatcattgg--cccct 200
           ||||||||  ||||   || ||| ||||||||| | | |||||||| ||||||   ||||
Sbjct: 983 atgagaaaacatgg---agctggatacatggctca-atgtataagagcattggttgccct 928

                                                                       
Query: 201 gtgcacaggttccaggattcaattaccagggcccatcttgtttgtcacagcc---ttttg 257
            || | ||  ||| |||||||||| |||||||||| | ||| ||||||||||   |    
Sbjct: 927 -tgaagagaatcctggattcaattcccagggcccaccctgtgtgtcacagccacat---- 873

                                                                       
Query: 258 gtaagtgctgtttcaggggatctaatactatctaacttctgatctctacacggtccagtt 317
           |||||| || || |||||||||| |||||| |||||       ||| ||| ||||||| |
Sbjct: 872 gtaagtcctattccaggggatctgatactagctaac-------ctccacagggtccag-t 821

                                                                       
Query: 318 ta-gtgcacaggcagcagacacaccccttcaggtaaaaca--ttcataaaatagaaataa 374
           ||  |||| || || ||||||||||||||||||||||| |  |||||| |||||||||||
Sbjct: 820 tacatgcatagccaacagacacaccccttcaggtaaaa-atgttcatacaatagaaataa 762

                                                                       
Query: 375 tgaaaattctacagtttaccaattgccatataaaacttgatttccaaatgatcacacata 434
           |||||| | |||||||||||||||| ||| || |||||||||||  ||||||||||||||
Sbjct: 761 tgaaaactatacagtttaccaattggcatgtagaacttgatttctgaatgatcacacata 702

                                                                       
Query: 435 ctattaggagag--gacctcaaaatgtggatgtaggtcaaaaattttgatatatttgata 492
            ||| |  ||||   || ||||||| ||||||||||||||  |||||||||| |||||||
Sbjct: 701 ttatca--agagcaaacttcaaaatatggatgtaggtcaaccattttgatatgtttgata 644

                                                                       
Query: 493 cttattttttctttcttttctgttttacaccacctaggaccccacatcccaatgacctgg 552
           |||||||||||||||||||||||||| |||| ||||| |||||| ||||  |||| ||||
Sbjct: 643 cttattttttctttcttttctgttttgcacctcctagaaccccaaatcctgatgaactgg 584

                    
Query: 553 aggagagta 561
           || ||||||
Sbjct: 583 agaagagta 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)