BAC Information

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BAC

Clone NameMSMg01-426N19
ChromosomeX (Build37)
Map Location 86,692,121 - 86,692,277
singlet/doubletsinglet
Overlap geneEG629419
Upstream geneLOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2
Downstream gene4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426N19.T7 (MSMg01no426_n19.b1)MSMg01-426N19.TJ (MSMg01no426_n19.g1)
ACCAG520199AG520200
length874794
length of high quality
(start - end)
---160 (79 - 238)
definitionCHROMAT_FILE: MSMg01no426_n19.b1 PHD_FILE: MSMg01no426_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:33 2005CHROMAT_FILE: MSMg01no426_n19.g1 PHD_FILE: MSMg01no426_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTTCGNCCNNNANANNANCNTTTTTCAAAAACGATCCGCGGGAATTC
ACTATTGTGTCGTCGTGGGGGGGGGGGGGGGGGGGGGGGAGGGGGCGGCT
GTGGGGGGGGGTGGGGGGGGGGGGGGGGGTGGGTGGGTGGGGCTGCGTGG
GTGGGGGGGGGGGTNCNTNTTNCCTTNACANNNATTTCTTTCCCTTTCCC
CNNNNAANNNNNNATTTTTTNCCCCCCNNNNNAATTCCCCNTCCCCNAAN
AAANAANTTTTTCCCCNNNNNNNNNNNNNNNTTNNNCCAAAACCCCNNAA
AANNNNNNNANNNNNNNTTTTTTTTTTTTCNAAAAACCCCCCCCCCCCNN
NNNNNNNNNNTTTTNNNNNNTNNNAAAANCCAAANNNNNNNNNNNNNNNN
CNCTTTTTTNCCCNNNNNCCCCCCCCNNNNCCCCCCCCCCCCCTNNNNAA
TTTTTTTTTTNTTTTTTNNNNNNNNCNNNNNNNNNAACCCCCCGCTNTTT
NTACTCNNNNNNCCNCCCCCTTTCTAAAAACCCCCCNCCCCCCCCCCCCC
CCNNNNNACCCTTCCCCCCCCCCNNNNNNCGGGGCCCCNCCNNNNNNTTN
NTNNNNNNNTNNTTNTNNNNTNNNNNNNNNNNNNNNNNNNNCNNNNNNNN
NNNNNCCCNNNNNNNNNNNNNNTNNNNNCNCCCCCNTNNNNNTTTTNNNT
TCTTNNNNNTTTCNNNNNNTTTNNNNNTTCTNNNNNNNCCCCNNNNCTTN
NNNNNNNCTCNNNNNNCCTTCCCCCCCTCCTNNNTTTCNCNNNTTNNNNN
NNNNNNNNNNNCCCTNNNCCCNCCNTNTNTNCNCCCCTNNNNTCCCTCTC
ATCTGTCTTGGGTGGTGGGGGGGG
CCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGGATTGGTAAATTATGGG
CAAGTGGTACCTAATGAAAAAAACTGGTATTTGGAACTTTGGATTAAAGA
TATAGAAAGAATATTAGCAGAAATAATGCTATCAGAATAAAGGTAATTTG
GGTTTGAGATTGGGGATGTTAATTCTGTTATGAAGCACCTTATGTCTATC
GCGTTTCTGCGCAATATGACTTTGCTTCTTTCCTTACGACAGATGTCCAT
TGTAGTCTAGCCCGGCCCAAATCTCTTTTTTTCTCTAACGACCACCTCTG
AACTCCCGATCCTCCTTTTCCTACTTTCCAGACACTCGGACTCACGCTTC
GTGCTATTCTACTCTCGTTCCCCACCACCCTTTTCGCTCCTCCCTGATCT
TGCCTTGTCCCTCTCCTCCAATTTCTCTTCGCCTATTTCATTCCCCCCTC
CCTCCTCACACCCTTCTCTCCCTTTCCTCCTCCTCACTCCCCCATCTCTC
TTCTTCCTTACCTATTCGTTCCCCTTCCTCTCTCTCTCTCTTGTCTTTCT
GCCACCACTTACCCACATTTTCATCCTATCATACCTTTCTTCTCCTGTCT
CCTCTTTCCTCTCTCCTCACCCCCACCCTCCTTTCCTTTCGTCTTATTCC
CCCCCTCCCCCACCTCTCTCGCCCCTGTCCCCCCTTTCCTCCTCATTTTT
TTCCTCTACCTCCATCCCTCCACGCCCCCTTCCTCCTCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_n19.g1 MSMg01no426_n19.g1 CHROMAT_FILE:
MSMg01no426_n19.g1 PHD_FILE: MSMg01no426_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:33 2005
         (160 letters)



>mm_chrX_86691921_86692480
          Length = 560

 Score =  304 bits (157), Expect = 2e-87
 Identities = 157/157 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatggattggtaaattatgggcaagtggtacctaatgaaaaaaactggtatttggaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acatggattggtaaattatgggcaagtggtacctaatgaaaaaaactggtatttggaact 298

                                                                       
Query: 61  ttggattaaagatatagaaagaatattagcagaaataatgctatcagaataaaggtaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttggattaaagatatagaaagaatattagcagaaataatgctatcagaataaaggtaatt 238

                                                
Query: 121 tgggtttgagattggggatgttaattctgttatgaag 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgggtttgagattggggatgttaattctgttatgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)