BAC Information

Click to search

BAC

Clone NameMSMg01-426P17
ChromosomeX (Build37)
Map Location 126,501,957 - 126,502,426
singlet/doubletsinglet
Overlap geneDiap2
Upstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
Downstream geneLOC100040092, LOC665773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426P17.T7 (MSMg01no426_p17.b1)MSMg01-426P17.TJ (MSMg01no426_p17.g1)
ACCAG520291AG520292
length784787
length of high quality
(start - end)
467 (44 - 510)470 (74 - 543)
definitionCHROMAT_FILE: MSMg01no426_p17.b1 PHD_FILE: MSMg01no426_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:43 2005CHROMAT_FILE: MSMg01no426_p17.g1 PHD_FILE: MSMg01no426_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGGTAAGATCAAAAATTCAGGAGATGCTGGC
GTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGA
CATAGTACTACCCGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAG
AAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACT
CAGCTATTAANAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGAC
CTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAATTCCCA
CCATATGTACTCCCTGATAAGTGGAATTTACCCCCAACCCTAGATACCCC
AGAATTAGTAAATTTTTTGTTAAACCCCTTGAAACTCACAAAAAATGGAA
AATTGAGTTGGGGGAACTTAGCCCCCCCCTCACAATTGGAAAAAAACCAC
CCTCGGCAAGGGGTTTCAAAAAAAATATCTTTTG
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCTCCATTGGCATAAAACATGAACT
GGAGGAGGAAAAACTATAGGCAGGAAGACAAATAGGAGACAATTAAAATA
GCTTGGGCAAAATGTGAGGGAAGTAGACAAGAAAGGAGTGTGGTTTGATG
AAGAGGTGAAAAAGGCACTGGGAGAATTTAAATAAAACAGGAACTAACAT
TCTTTGTCAGGAAAAGGTCAAGCAAAAAAAAAAATCAAACTTTCGTGTTA
AGAAAATAGTGGTAAATTTTAAAACAAATAAAAATGGAGACTGAGCTGGT
TTAAGGAAATAGAAAAGATCAAAAACATTGAGTTTGATTTCAATACAAAA
GACTTGCCTATGGGGACAGCTACAAATGTAAGATAGACTCAAAAGCCTTG
ACACCTACTAAAAGGTGATGTATGAACATATGAAACTGAGTGGGACGTTT
GTGCAAAGAAATACAAAGCAGAGAAAACTGCCAAGGGCAGAGAGAACACA
GAGATATCTCGCCATTGGGGAATGAGAAAATAAGAGAAATCTAGTTCTCA
GACAGCAGTAGCATAATACTGGGAGGAAAAACAAAGACTTAAATGGTGAA
CATACATGATATATGGGCTGTGGGTAACTAAGGGGGACACCGTGGGGAAC
TTTGTATTTTACCAGGGCCTTTGGAAGGAATTCCTCCGCCCAAAAATAAA
AAGAGATGGGTGCAATCCCCCCTATCCTCTTTACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_p17.g1 MSMg01no426_p17.g1 CHROMAT_FILE:
MSMg01no426_p17.g1 PHD_FILE: MSMg01no426_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:43 2005
         (470 letters)



>mm_chrX_126501757_126502626
          Length = 870

 Score =  901 bits (466), Expect = 0.0
 Identities = 469/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctccattggcataaaacatgaactggaggaggaaaaactataggcaggaagacaaat 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 attcttcattggcataaaacatgaactggaggaggaaaaactataggcaggaagacaaat 611

                                                                       
Query: 61  aggagacaattaaaatagcttgggcaaaatgtgagggaagtagacaagaaaggagtgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aggagacaattaaaatagcttgggcaaaatgtgagggaagtagacaagaaaggagtgtgg 551

                                                                       
Query: 121 tttgatgaagaggtgaaaaaggcactgggagaatttaaataaaacaggaactaacattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tttgatgaagaggtgaaaaaggcactgggagaatttaaataaaacaggaactaacattct 491

                                                                       
Query: 181 ttgtcaggaaaaggtcaagcaaaaaaaaaaatcaaactttcgtgttaagaaaatagtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttgtcaggaaaaggtcaagcaaaaaaaaaaatcaaactttcgtgttaagaaaatagtggt 431

                                                                       
Query: 241 aaattttaaaacaaataaaaatggagactgagctggtttaaggaaatagaaaagatcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaattttaaaacaaataaaaatggagactgagctggtttaaggaaatagaaaagatcaaa 371

                                                                       
Query: 301 aacattgagtttgatttcaatacaaaagacttgcctatggggacagctacaaatgtaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aacattgagtttgatttcaatacaaaagacttgcctatggggacagctacaaatgtaaga 311

                                                                       
Query: 361 tagactcaaaagccttgacacctactaaaaggtgatgtatgaacatatgaaactgagtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tagactcaaaagccttgacacctactaaaaggtgatgtatgaacatatgaaactgagtgg 251

                                                             
Query: 421 gacgtttgtgcaaagaaatacaaagcagagaaaactgccaagggcagaga 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gacgtttgtgcaaagaaatacaaagcagagaaaactgccaagggcagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)