BAC Information

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BAC

Clone NameMSMg01-428K07
ChromosomeX (Build37)
Map Location 38,754,740 - 38,754,888
singlet/doubletsinglet
Overlap geneGria3
Upstream geneLOC100039769, LOC385344
Downstream geneLOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428K07.T7 (MSMg01no428_k07.b1)MSMg01-428K07.TJ (MSMg01no428_k07.g1)
ACCAG521561AG521562
length759771
length of high quality
(start - end)
244 (77 - 320)149 (170 - 318)
definitionCHROMAT_FILE: MSMg01no428_k07.b1 PHD_FILE: MSMg01no428_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:53 2005CHROMAT_FILE: MSMg01no428_k07.g1 PHD_FILE: MSMg01no428_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAGAGGATC
CGCGGAATTCATGATTATCTGTATGCACACCAGTGTTCTGTGTTGAATGC
TTTCCTAAATTATTCTCAATTTTTCTCTTGAGGCAAAAATCTCTCGATAA
AACTGGAGCTCATTGACTTGACAATGTTGGCTAGCCAGTGAGTTCCAGGG
TTCTCCTGTCTCTTCCCGCTTCCCTTCCCCCACACTTGGATTGTAGGCAC
TCACCACCATGCCTACCTTTTCTCCATGAGTTTTAGGGACCCAAATTCAG
GACCATGTCTAGAACATTTTTTTTTGTACCGTTTTCTGGCCTACTATCAC
CTCTAACATCTTTAGTGTAACAAAATTTTCAAATATATGGAAACTTTGAA
AGCAAACTTGTTCTGAAAACCCTTATAGTTGATATTCATATCTTATTATT
TGTGTTCTCTGGTCCAATACTTCATTCTATTTTTGTAACACATCTCCCAC
ACTAGCGTCACTTATTTGCTTACATTACTCTCCTTTTCCCTTTTAGGTCT
AACCCTTAACGTTTAACAGCTATCATTTCTTGTTTATTTTTTTCCTTCTA
CCTATCCTTTCCTGCCCTTGTGTTTTATATTATTCCTTTCATGTTTCTTA
TGTTACCCGTTTTTTTCTCCCTCCTCTTCGCCCCTTTTTTGTTTCCCCTT
TTTTCTCTACACCTTTTTCCCCTCCCTTCCCTTCTATTTTTTTCCCCCCT
TTTTTTTTC
TTTCGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACCCGAAAAATTCTTTTTCTTTTTCTATTATTATTT
TGACGACTCCCGAGTTGCGCCCATGCTCTTGTCAGCTTCGTTTTAGGCGT
AGCACAGTCAGGCAGAAGAAAATGGGGCAAAACGTGCTCCGGGCGGTCTT
CTTTTTAGTCCTGGGGCTTTTGGGTCATTCTCACGGAGGATTCCCCAACA
CCATCAGCATAGGTAAGCTCCCCAGAGCCAGCCAGAGGGGGCCAGGCTCT
TCTGCATTTGAAACCCACTATTCTATTGGGGCTGGGGGTATCGTCAACAT
GAGTCCCTGTCCTGCATGGTTCGGGGACGTTGTCTAGGGATGGGGGACTG
ATCTGAGATATTGGAGACCTGAGCTGCAAAGAACTGACGAGTATGGGGAG
CATCCAAGATGAGGCAAGGGGTCCCCTGTTGTTATTGCGGTTGGACGTTC
ATGCCCCCTGACCGACGATCATTTTATTTCACCCGCATTTTGTTATGTCT
GTTCCACTCTCCCCCCCTTTTTTTTTATTTTCTCCACCCTCTTTTTTTTC
CTTATTCCGCTTTTTTATTTTTTCCCCTTTTTCCCATTCTCTTTTTCCGC
CCCGCCCGTTATTTCTTTATTTTTTGTATACTCTGCACTACTCCTCCCCC
ACCACCTCTTATACGTCTTTCTTTCCTTTCTATCCAGCATAATATCAACC
CGTTTTTTTTTCTCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_k07.g1 MSMg01no428_k07.g1 CHROMAT_FILE:
MSMg01no428_k07.g1 PHD_FILE: MSMg01no428_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:53 2005
         (149 letters)



>mm_chrX_38754540_38755088
          Length = 549

 Score =  281 bits (145), Expect = 2e-80
 Identities = 148/149 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatggggcaaaacgtgctccgggcggtcttctttttagtcctggggcttttgggtcatt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatggggcaaagcgtgctccgggcggtcttctttttagtcctggggcttttgggtcatt 260

                                                                       
Query: 61  ctcacggaggattccccaacaccatcagcataggtaagctccccagagccagccagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcacggaggattccccaacaccatcagcataggtaagctccccagagccagccagaggg 320

                                        
Query: 121 ggccaggctcttctgcatttgaaacccac 149
           |||||||||||||||||||||||||||||
Sbjct: 321 ggccaggctcttctgcatttgaaacccac 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)