BAC Information

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BAC

Clone NameMSMg01-428L17
ChromosomeX (Build37)
Map Location 68,914,428 - 68,914,966
singlet/doubletsinglet
Overlap geneLOC100040549
Upstream geneLOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1, Mtmr1, Cd99l2, LOC667017, Hmgb3
Downstream geneGpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10, Gabra3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428L17.T7 (MSMg01no428_l17.b1)MSMg01-428L17.TJ (MSMg01no428_l17.g1)
ACCAG521629AG521630
length766767
length of high quality
(start - end)
503 (43 - 545)539 (73 - 611)
definitionCHROMAT_FILE: MSMg01no428_l17.b1 PHD_FILE: MSMg01no428_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:00 2005CHROMAT_FILE: MSMg01no428_l17.g1 PHD_FILE: MSMg01no428_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATTCTTTGCACCACATGGTAGCTCACAACCATCTGTAGTGGAATTCG
ATGCACTCTTCTTGTGTGTCTGAAGACAGCTACAGTGTACTCATATATGT
AAAATAACTCTTTAAGAAAAAGAAAAATATTTAAAAAAAAAGAAAACAAA
TACCACCAACTAGGTTGGGGAACAAACTAGTACAGCCATTATGGAACCCA
GTATGGAGATTTTTCAAAACTCTAACAAAACAACCACGTGACCATGCATT
TTTTATTTTTTGCAGGTATACACTTTAAAATAAATTATAATTTTAATATT
GATTTAGATTCAGGTTTTGTTCTAACTGCTTTCTGATGTAAAAATAATCT
GGAAGCTTAATTTAAAAGTTTAACTTATAGCTAGATGGGGTGATACATAC
TAGAAATCCCAGCACTTGGGAGGCAGAGACAGGAGGATTGTAAGAGTTCA
AGACAGCCTGGGTTACATAGGTAATATTCAGGCAAGCTAGGGGTAGAGAA
TTGGACCCTGTTTCAAATATAAGAAGACCAAAACCCAAGCACTAATGAGA
GACACAGACCATGTTTTCAAAAGCTGCTTCTCCTTGGCTACTTTCTCTAG
CTTCCTTGTAGAAGTACCATAATATGAACTAACCTGTACCCCCCAAAGTT
GTGTCTTCTAGTTGCCTAAGTTTTTAGACGCATGACCTATTTTTTTCCTT
CCTTGTTATCCTCCTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTAAACAGAATAGAATGGAAGAAAAAT
GGAAAGCAGCTATGTAGGGGCTGCAGACACTACTCTCTTCCTTCTGGAAG
GTTGTTGCGGGCTGTCAGGCAATTATGCTCCAGTCTGAGGATTATGGAGC
TGAAGTAGCACTGAAGCTGGCAGTCCCTGAGTCCCTGACGCTGGAAGCTA
GCCTTGAAAGCGGGCTGGAAATTTTAGAGACTGAGGAGTGAGCAGGAGAG
CAAGCCTGGCCCCTGACCACTGACTGTTTGGACAATATTTGACCATGACT
TCCTGGTGCTTTGATTTTCAACACCAACAGACAAATATTTTAATAATCGC
GGGAGAAATAATTGTTTCTACTTGAATTAATTGTTATCTTTATGAACTAG
CTAAATACAGACTCAGATCACGTCAATAGTAAGGAAAAGGCATGGCTATC
AAAGCTGTCGTATGAACACAGGAGGGAGAGAGCTGGGGGCCTGTTTGCAG
GGGTAAGTAGAACAAATCTCATGTACAATACATTTAATGGCTTTGGAGCA
TTTAAATTGTGACTCCTTTGTGAGGTACAGTGCAAAGTGTATGATTTTTA
GACTCTAACAGCATTTTCAAAAGTATGTATAGCCTGCTTATAAACCTTTA
TAACTGGGGGGAGACAGAACCTGGAAACTTGTAAACTTATTATCCCAAGA
ATCCCAAAGGGGGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_l17.g1 MSMg01no428_l17.g1 CHROMAT_FILE:
MSMg01no428_l17.g1 PHD_FILE: MSMg01no428_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:00 2005
         (539 letters)



>mm_chrX_68914228_68915166
          Length = 939

 Score = 1035 bits (535), Expect = 0.0
 Identities = 538/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaacagaatagaatggaagaaaaatggaaagcagctatgtaggggctgcagacacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 attaaacagaatagaatggaagaaaaatggaaagcagctatgtaggggctgcagacacta 680

                                                                       
Query: 61  ctctcttccttctggaaggttgttgcgggctgtcaggcaattatgctccagtctgaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctctcttccttctggaaggttgttgcgggctgtcaggcaattatgctccagtctgaggat 620

                                                                       
Query: 121 tatggagctgaagtagcactgaagctggcagtccctgagtccctgacgctggaagctagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tatggagctgaagtagcactgaagctggcagtccctgagtccctgacgctggaagctagc 560

                                                                       
Query: 181 cttgaaagcgggctggaaattttagagactgaggagtgagcaggagagcaagcctggccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttgaaagcgggctggaaattttagagactgaggagtgagcaggagagcaagcctggccc 500

                                                                       
Query: 241 ctgaccactgactgtttggacaatatttgaccatgacttcctggtgctttgattttcaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctgaccactgactgtttggacaatatttgaccatgacttcctggtgctttgattttcaac 440

                                                                       
Query: 301 accaacagacaaatattttaataatcgcgggagaaataattgtttctacttgaattaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 accaacagacaaatattttaataatcgcgggagaaataattgtttctacttgaattaatt 380

                                                                       
Query: 361 gttatctttatgaactagctaaatacagactcagatcacgtcaatagtaaggaaaaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gttatctttatgaactagctaaatacagactcagatcacgtcaatagtaaggaaaaggca 320

                                                                       
Query: 421 tggctatcaaagctgtcgtatgaacacaggagggagagagctgggggcctgtttgcaggg 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 tggctatcaaagctgtcgtatgaacacaggagggagagagctggggacctgtttgcaggg 260

                                                                      
Query: 481 gtaagtagaacaaatctcatgtacaatacatttaatggctttggagcatttaaattgtg 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtaagtagaacaaatctcatgtacaatacatttaatggctttggagcatttaaattgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)