BAC Information

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BAC

Clone NameMSMg01-428O06
ChromosomeX (Build37)
Map Location 62,849,755 - 62,849,891
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428O06.T7 (MSMg01no428_o06.b1)MSMg01-428O06.TJ (MSMg01no428_o06.g1)
ACCAG521750AG521751
length788767
length of high quality
(start - end)
62 (82 - 143)139 (73 - 211)
definitionCHROMAT_FILE: MSMg01no428_o06.b1 PHD_FILE: MSMg01no428_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:12 2005CHROMAT_FILE: MSMg01no428_o06.g1 PHD_FILE: MSMg01no428_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGACCATGC
CGCGGAATTCACCAACTTGCCTACTAATATGTCATGCACCCCTGCTATAC
CTGTGCTGTACTGAAGTTCTCTGTCTCACTGGTATTCCCTAACTCTTTCA
TGGCAAACCCACCTATTATCTAGGCCAATGCGTATTCCTTTGTTTGATGA
GATTGGCTGCTGTCCCAAGTAAACACTCCGCATACCAGCCCTGAGTTGCT
CCAGCTCCTCTCCTTCGTAATGCTTACTTAGCTACTGAATAGGTAATTTT
CTTACTGAATTCCACGTTTGCAGTTTTTTTTTTTATTCTGGCACATTGAT
CCTCTGACAAAGGCTTTATCTATGTCCCAACTCAATCCTTATAAGGACTT
ATAATAAGATAATACCTACCTCAGAGCATGTGTATCCATACTCCATATTA
TTTCTCCGCACAGTTTATTACCATATGCCTTACGACAACCGCCTATGTTC
CCGTATCTGAGTTCCCTTGAAATCCATTTGACTCCCGATTGTTCTCATAT
TCTCTCGTTTTTCCCCAGTCATTTCCTATGCTAGCGTGCTGTTTTTCTAC
TTACATAACCCCCCCTATCCTACTCCTCTATTCTACCTGTTTCTCCCTTT
TTTATCCCTCTTCTCTACCTATCCCTCTTCTCTTTTTGTTTCCATTCCTT
TTCCTCCACAACCCCTTTCTTCCTTTCCATATTTTCCTCCTATCCCCCTT
CTCCCCCTTTCCCCTACTATTTTCACTTCCCTCACCCN
CTCGATGATATGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTCGCGAAATTCAATTACTGATTTATTTAACTTGCAGA
ATATTTGTGAATATCATAGCTACACAAAACAGTGGTGTCAAAACTAAAAA
CGAAATACAGAAACACCTTTACAACCACCATTAGTTAGTGTATAAATAGA
AAAACAAAACTATTGAATAGTGTCCTCTATTTTTTTCTTAATCTGAGTAA
GATGAGTTTATGGACAACCTTGCACAAATTTCATGAAATCATGCCCTATA
CCATAGTTATTATAATCATGTTTTACTAACCCAATAGGTACCCTAGGAAT
CGAAGAAAATATCTCAACACACCCCCCCACACACACACATTGTGATAAAA
TAGCAAACTGATCATATTCTGTGGGACGAGCTCATTTTAACTTTTCAATA
AAATTCCCCATGACAAAAATTCATGTCTCAACACTATTACCTAACTCCAT
TACCTGCAAAATGGCCTTATCTTAGCTGCTTCTGTCTATTTGGAAACATC
TCCCTACAGACTCTATCACACAATGTTGCGACATGCATTAATATCCTATT
TTTATCATTACAGATTCACCTTCTTAAATACTGTCTAGTGCACTGTTCTT
TTCTAGCGATTTATTTCGCCAGCTAATGATAATGTTCCTTTCTCCCAAAC
CCTTTTTGAAAACGTCCACAACTACCTCCCCCAACTTTCTAATAATTCCC
TCGCTCCCTATAATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_o06.g1 MSMg01no428_o06.g1 CHROMAT_FILE:
MSMg01no428_o06.g1 PHD_FILE: MSMg01no428_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:12 2005
         (139 letters)



>mm_chrX_62849555_62850093
          Length = 539

 Score =  250 bits (129), Expect = 4e-71
 Identities = 135/137 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaattactgatttatttaacttgcagaatatttgtgaatatcatagctacacaaaacag 60
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 201 tcaattactgatttatttaacttgcagaatatttgtgaatatcaaagccacacaaaacag 260

                                                                       
Query: 61  tggtgtcaaaactaaaaacgaaatacagaaacacctttacaaccaccattagttagtgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtgtcaaaactaaaaacgaaatacagaaacacctttacaaccaccattagttagtgta 320

                            
Query: 121 taaatagaaaaacaaaa 137
           |||||||||||||||||
Sbjct: 321 taaatagaaaaacaaaa 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)