BAC Information

Click to search

BAC

Clone NameMSMg01-429C05
ChromosomeX (Build37)
Map Location 90,642,573 - 90,643,126
singlet/doubletsinglet
Overlap genePola1
Upstream geneMageb18, EG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx
Downstream geneEG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429C05.T7 (MSMg01no429_c05.b1)MSMg01-429C05.TJ (MSMg01no429_c05.g1)
ACCAG521938AG521939
length728720
length of high quality
(start - end)
587 (33 - 619)596 (67 - 662)
definitionCHROMAT_FILE: MSMg01no429_c05.b1 PHD_FILE: MSMg01no429_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:31 2005CHROMAT_FILE: MSMg01no429_c05.g1 PHD_FILE: MSMg01no429_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCT
TCCTATGCCAACTCATAAAAGCATCCCAGTAGCAACACTTTGCCTGATGT
GCATGATCCAGTTCTTGCTGACTTGATCTTTCTGAAAATGCAGGCAAGGG
TAGCCACATAAAGCTGGATGGCAGTGGTACGCACAGATACATTGAGACAA
AGTCCAGGAGAACAAAAGCACAACACACAATTGAAACATTTCTCGTTGTC
TCTGTGGAGCTCACTGGCAGCGACATTGATTTTGAATTTCTAGAGTTTAA
GAAAAGCTCGCACAAGCTAGCCTTTTATTTTTTCAACAGACTTAATTGTA
TCTTTTTTTTTAAACATAAAACCACGGTGTCACCAGGAGAGATAGCTCAG
TCTTTATAGTGCTAGCATTGCAAGCATAAGAACAATAGTTCAGTTCTGGG
AAACTACATTTCAAAAGCCAGGTGTGGTGACACAGCAGATTTATAATCCT
TGAAGTAGGGAGCTCTCTGGCCAGCCTTATCTACATGGAGAGCCCCCCAT
GTTCAGCGAAGAACCTTATCTCTAAAACCCAAGCTGAATGGTACCTGAAG
AACAATACCAGAGATTGTCCTGTTGTTCAGTATTGGTCTGTGAATTCTTG
GTATGGAAGTGTAGCTGGCCACTATTAGCAGCTTCTTGAGCACAGGAGCA
GAGATGGTGCCCAGGCCACTGGAAGTAA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTTCTCGCGGAATTCAGTGAAAATAAGGGCACTTATATACCTA
GACTTACGAAACACTATGAAATGAGTGTTAAGAGGAAAGTTCATAGCACT
AAGTGCTCTCATACTAACAAATTAAAAGTACATCTGAAGGCTCTAGAAAA
CCAAAAGAAGCAATCACACCCAGGAGGACAGCAGGAAATAAACTCGGGAC
TCAAATCAATCCATTAGAAACAAGAGAACAACACAAAGAATCAATGAAAC
AAAGAGTTGATTTTTTATGAAAATCAATAAGATAGACAAACCTTTAGCCA
TACTAACTAAAAAACAGAGAGACAGTACCCAAATTAACAAAATCAGAAAT
AAAAAGGGAGACATAACAATGGACACTGAGGAAATTCAAAGAGTCATTAT
ATCTTACTTCAAAAGCCTCTACTCCAAAAAATTTGAAAATCTAAATGAAA
TGGATGATTTTCTAGATAGCCAAATCAAGATCAGGAAAACCATATAAATA
GTCCTATAACCAAGCCTCTACTCCAAAAAATTTGAAAATCTAAATGAAAT
GGATGATTTTCTAGATAGCCAAATCAAGATCAGGAAAACCATATAAATAG
TCCTATAACCCCAGAGGAAATAGAAGAAGTCATTTAAAATCTCCCAATCA
AAATAAGCCTTGGGCCAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_c05.b1 MSMg01no429_c05.b1 CHROMAT_FILE:
MSMg01no429_c05.b1 PHD_FILE: MSMg01no429_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:31 2005
         (587 letters)



>mm_chrX_90642573_90643560
          Length = 988

 Score = 1002 bits (518), Expect = 0.0
 Identities = 545/556 (98%), Gaps = 5/556 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcttcctatgccaactcataaaagcatcccagtagcaacactttgcctgatgtgca 71
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaattcttcctaagccaactcataaaagcatcccagtagcaacactttgcctgatgtgca 495

                                                                       
Query: 72  tgatccagttcttgctgacttgatctttctgaaaatgcaggcaagggtagccacataaag 131
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 494 tgatccagttcttgctgacttgatctttctgaaaatgcaggcaagggtaaccacataaag 435

                                                                       
Query: 132 ctggatggcagtggtacgcacagatacattgagacaaagtccaggagaacaaaagcacaa 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctggatggcagtggtacgcacagatacattgagacaaagtccaggagaacaaaagcacaa 375

                                                                       
Query: 192 cacacaattgaaacatttctcgttgtctctgtggagctcactggcagcgacattgatttt 251
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cacacaattgaaacatttcttgttgtctctgtggagctcactggcagcgacattgatttt 315

                                                                       
Query: 252 gaatttctagagtttaagaaaagctcgcacaagctagccttttattttttcaacagactt 311
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 314 gaatttctagagtttaagaaaagctcacacaagctagccttttattttttcaacagactt 255

                                                                       
Query: 312 aattgtatc---tttttttttaaacataaaaccacggtgtcaccaggagagatagctcag 368
           |||||||||   |||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 254 aattgtatctttttttttttt--acataaaaccacggtgtcaccaggagagatagctcag 197

                                                                       
Query: 369 tctttatagtgctagcattgcaagcataagaacaatagttcagttctgggaaactacatt 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tctttatagtgctagcattgcaagcataagaacaatagttcagttctgggaaactacatt 137

                                                                       
Query: 429 tcaaaagccaggtgtggtgacacagcagatttataatccttgaagtagggagctctctgg 488
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tcaaaagccaggcgtggtgacacagcagatttataatccttgaagtagggagctctctgg 77

                                                                       
Query: 489 ccagccttatctacatggagagccccccatgttcagcgaagaaccttatctctaaaaccc 548
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 76  ccagccttatctacatggagaggcccccatgttcagcgaagaaccttatctctaaaaccc 17

                           
Query: 549 aagctgaatggtacct 564
           ||||||||||||||||
Sbjct: 16  aagctgaatggtacct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space:   564306
Effective search space used:   564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)