BAC Information

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BAC

Clone NameMSMg01-429E02
ChromosomeX (Build37)
Map Location 91,028,068 - 91,028,567
singlet/doubletsinglet
Overlap genePdk3
Upstream geneLOC100042663, Rp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b
Downstream geneEG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429E02.T7 (MSMg01no429_e02.b1)MSMg01-429E02.TJ (MSMg01no429_e02.g1)
ACCAG522027AG522028
length732716
length of high quality
(start - end)
73 (56 - 128)508 (76 - 583)
definitionCHROMAT_FILE: MSMg01no429_e02.b1 PHD_FILE: MSMg01no429_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:41 2005CHROMAT_FILE: MSMg01no429_e02.g1 PHD_FILE: MSMg01no429_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCAGGA
GTTCTGCTTGCTCTAGTCGGCCCCACTCGCTCCGGCCCACAAATTATTAT
AAATAAGTACACTGTTGCTGTCTTCAGACACACCAGAAGAGGGTGTCAGA
TCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGCATTTGAACT
CAGGACCTTCAGAAGAGCAGTCAGTGCTCTTACTGCTGAGCCATTTCGTC
AGCCCACAATGCCTCTTAACATATACCCAATCTTCCACTTAATACTTGTG
TGGAACCTCTGGTGTACCTGCGTTATACAGGGCGCACTAAATTTAGGCCA
CAATTCCTGGTGGCCCATCTGAAAAACTTGCAATCAAACCATAACATCCT
TGTCAGCCTGAAAAGTCACTCTGGCGGGCATCAAGAGCCGGGGTCAAGGG
AGTGGGGTCCCATGCAGGATCTCAAAGGGGTCAGGTTAAATATTACGGGA
TGTTCCAGGCTCGGAACAGGGACAGGGGAAGGATCACCACCCAGGCAGCA
CCAGTCTCCTAGGACAATTTAGTTAGGCCTCTTTTAAGGTTCTATTTATT
CTTTCTACCTGCCCTAAGCTCTGGGGAAGGTATGCACAGTGTGGCTTCCA
ATTAGACCCCAATGTGGCTGGCAATCCCTGACTTGCCTTAAGAACAAGAC
AGGACCGTTGTCCCTATCTTGGGGCATTTGAA
TAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGGAATACATCTGTTTTTATCTG
CCCACTGGTGGAGTTAAAGGCATGTGCCATCATGCCTGGTGGCTTTAGGG
TTTTAAAAGTATTCATCTCAACCCAGAAAGAATGTTTTTATTAGATGTAA
TGTGGCTACAGAAGCTGGTTTGTGCATTTTAAATGCTATTTATCACTTGC
ATTTATAAGGCACCTATCCTCTAATATGCAGGCAGAAAAACTGAAGGGAT
TCATACTTCTCATAAAAATTAATCTCTGGAATGAAAAAAGGATAATATCC
ATCAAAAAGGAGTTCTGCAAAGTTCCAACTGACAAAGAGAACGCTCACAA
CTGCATGCCCATCCTAGTGTTAGAGCAGGAGCATTCATGTTCTTGGGAAG
AAACCAGCACAACTGCTTCTTTAGGTATTCAATTTAGTGTTTTATACATT
AAAGTGATGAAATGTTAGCTCAAATACCCTGTACTCATAACACTGCTACT
GTAAATATAACTGGCAACTGGATAACAAAAGTAACAGCTTACGCCATAGA
GAGTCTGAAAAAGGTTTGGTTTTCTTTCCTTTTACACCCAGACTCCACAT
TTTTCCCTCCCCTGCCTCCATTCCGCCTTTTTGAACTGATTCCCACTATA
AAATGGCCACCCGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_e02.g1 MSMg01no429_e02.g1 CHROMAT_FILE:
MSMg01no429_e02.g1 PHD_FILE: MSMg01no429_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:41 2005
         (508 letters)



>mm_chrX_91027862_91028769
          Length = 908

 Score =  944 bits (488), Expect = 0.0
 Identities = 497/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   atacatctgtttttatctgcccactggtggagttaaaggcatgtgccatcatgcctggtg 66
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 207 atacatctgtttttatctgcccactggtggggttaaaggcatgtgccatcatgcctggtg 266

                                                                       
Query: 67  gctttagggttttaaaagtattcatctcaacccagaaagaatgtttttattagatgtaat 126
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 gctttagggttttaaaagtattcatctcaacccagaaagaatgtttttattaaatgtaat 326

                                                                       
Query: 127 gtggctacagaagctggtttgtgcattttaaatgctatttatcacttgcatttataaggc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtggctacagaagctggtttgtgcattttaaatgctatttatcacttgcatttataaggc 386

                                                                       
Query: 187 acctatcctctaatatgcaggcagaaaaactgaagggattcatacttctcataaaaatta 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acctatcctctaatatgcaggcagaaaaactgaagggattcatacttctcataaaaatta 446

                                                                       
Query: 247 atctctggaatgaaaaaaggataatatccatcaaaaaggagttctgcaaagttccaactg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atctctggaatgaaaaaaggataatatccatcaaaaaggagttctgcaaagttccaactg 506

                                                                       
Query: 307 acaaagagaacgctcacaactgcatgcccatcctagtgttagagcaggagcattcatgtt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 507 acaaagagaacgctcacaactgcatgcccatcctagtgttagagcaggagcattcgtgtt 566

                                                                       
Query: 367 cttgggaagaaaccagcacaactgcttctttaggtattcaatttagtgttttatacatta 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cttgggaagaaaccagcacaactgcttctttaggtattcaatttagtgttttatacatta 626

                                                                       
Query: 427 aagtgatgaaatgttagctcaaataccctgtactcataacactgctactgtaaatataac 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aagtgatgaaatgttagctcaaataccctgtactcataacactgctactgtaaatataac 686

                               
Query: 487 tggcaactggataacaaaag 506
           ||||||||||||||||||||
Sbjct: 687 tggcaactggataacaaaag 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)