BAC Information

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BAC

Clone NameMSMg01-430G24
ChromosomeX (Build37)
Map Location 151,795,118 - 151,795,519
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4
Downstream geneLOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430G24.T7 (MSMg01no430_g24.b1)MSMg01-430G24.TJ (MSMg01no430_g24.g1)
ACCAG522932AG522933
length802879
length of high quality
(start - end)
412 (44 - 455)161 (75 - 235)
definitionCHROMAT_FILE: MSMg01no430_g24.b1 PHD_FILE: MSMg01no430_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:17 2005CHROMAT_FILE: MSMg01no430_g24.g1 PHD_FILE: MSMg01no430_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCG
GAATTCTTTGTACTTATGAGGTAGGAAATGCATAAATACCAGCTGATTCA
GTTTTGCTAAAGCATGTATTAACCAAGACAGTGTAGTGCCTTGTTTTGGA
ATGTAAAATCCTAGACATTTATTGTTTTGACCTTTGGTAGCTCTGTCAAA
TGCTTAAAATTTAAAGAATATATTGCTTCTTAGGACTGGAGAGATGGCTC
ACTAGGTTAAATGCTTACACACAAGAGGAGTAGCTTTTGGATCCTAAGCT
CTCATATAAATACTTGGCTGATGTGACAGCCTGCCTATAAGCCCAGTGCT
TGGGAGACAGAAATAGGAGATCCCTAGAACAAGATAACTAGATAGAATAG
CTAAATTCCTAAGCTCTGGGTTCTGCAACAGGAGCATCCTCAAAATATAA
TGTAGAGAGTGATTAAGGAAGACAATTGATGTCCACCTCATAGCTCCCAC
ATGTGCACATAGACTATCTCCCCAAAGTAACACCTATTAATGTGGTGTGT
ATGGCCCACCTATACTTAAAAATATTAATGCCAATGCCCTGGTTCAGGGC
AAACTTTTATGTAATTTTTTTATTGCCTGGGATCTTCTTTTATGCGACCT
TAAATTTATGTCTCAGATTAATTTCCTCTTACTTGCCCAGCGTATTCCAC
ACAAAAAAATATCCCCTCTTTTCTCTCCTTTACTTACCTTTCTCCATTGC
TCCGTTTCTTCTCTCTCTTTCTTTCTCTTATTTCTCTGCTCTCTTTTCCT
TC
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCACAACCCTGCTAGCTAGGTAGGT
ACTAATGCAATTACACTAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAATGAAAGAAAGAAAGAA
TGAAAGAATGATTGAAAGAAAGAAAGAATAGAAAGTTAGAATGAAAGATT
GAAATAATGTAAGAAAGAAAGAAAGAAAGATTTTTTTTTTATACTTACCG
TATCGTACTGGATATCTCTGTACCTCTATGATTCCCCACAATTTAGTCAC
CCCATGCTGCTATTGTGTATCCTTATCCTAGTCTGTCTTGCTCTCCCCTT
TTTCTATTTTATTTCCCTTTCTTCTGCCCCCCTCCCTACTACCCCTCCAT
CCCTTCTTCTTTCTTCCTTTTTTTTCCCCTTTTCTTTTCTTTCTTTTCCT
CTCTTTTTCTCATTCATTTTCCTTTCCTTCCCCTACATCCTCCTTCTACT
TTTCCCCAACTTTTCCACTTCTATTTTACTTCCCTTTTTTCCTTGTCCCT
TCCTCCCTACCTTCTCCCCCTTCTTTTTTCCCCTCCCTTCCTTCCCTCCT
CCTCTTTTTTTCTCTCCTTTTTCCCTTTCTCTCCCTTCCCTCCTCCCATC
TTCTCTATCCCTACCGCCGCCTCGCTTCCCCCCCCTTCTATCTCTCGCCG
TTACCTTTTTCCTCCCCATACCTTCCAATAATCCCTTTTTTTTCTCCCCC
CTCTCCTCTCTATTTCCCCCCCCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_g24.b1 MSMg01no430_g24.b1 CHROMAT_FILE:
MSMg01no430_g24.b1 PHD_FILE: MSMg01no430_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:17 2005
         (412 letters)



>mm_chrX_151794908_151795719
          Length = 812

 Score =  700 bits (362), Expect = 0.0
 Identities = 392/402 (97%)
 Strand = Plus / Plus

                                                                       
Query: 11  ttctttgtacttatgaggtaggaaatgcataaataccagctgattcagttttgctaaagc 70
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct: 211 ttctttgtacttatgaggtagggaatgcataaataccagctgatttagttttgctcaagc 270

                                                                       
Query: 71  atgtattaaccaagacagtgtagtgccttgttttggaatgtaaaatcctagacatttatt 130
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 271 atgtattaaccaagacagtgtagtgccttgttttggaatataaaatcctagacatttatt 330

                                                                       
Query: 131 gttttgacctttggtagctctgtcaaatgcttaaaatttaaagaatatattgcttcttag 190
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 331 gttttgacctttggtagctctgccaaatgcttaaaatttaaagaatatattgcttcttag 390

                                                                       
Query: 191 gactggagagatggctcactaggttaaatgcttacacacaagaggagtagcttttggatc 250
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 391 gactggagagatggcttactaggttaaatgcttgcacacaagaggagtagcttttggatc 450

                                                                       
Query: 251 ctaagctctcatataaatacttggctgatgtgacagcctgcctataagcccagtgcttgg 310
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 451 ctaagctctcatataaatacttggctgatgtgacaacctgcctataagcccagtgcttgg 510

                                                                       
Query: 311 gagacagaaataggagatccctagaacaagataactagatagaatagctaaattcctaag 370
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 511 gagacagaaataggagatccctagaacaagataactagctagaatagctaaattcctaag 570

                                                     
Query: 371 ctctgggttctgcaacaggagcatcctcaaaatataatgtag 412
           ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctctgagttctgcaacaggagcatcctcaaaatataatgtag 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)