BAC Information

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BAC

Clone NameMSMg01-430K07
ChromosomeX (Build37)
Map Location 140,471,928 - 140,472,268
singlet/doubletsinglet
Overlap genenone
Upstream geneRgag1, LOC209541, Chrdl1, Pak3, Capn6, Dcx
Downstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430K07.T7 (MSMg01no430_k07.b1)MSMg01-430K07.TJ (MSMg01no430_k07.g1)
ACCAG523089AG523090
length744767
length of high quality
(start - end)		420 (74 - 493)438 (79 - 516)
definitionCHROMAT_FILE: MSMg01no430_k07.b1 PHD_FILE: MSMg01no430_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:35 2005CHROMAT_FILE: MSMg01no430_k07.g1 PHD_FILE: MSMg01no430_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:35 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAATGGGTGCCTCAGATGTACCCCACCAGAACCAGGATAA
TTTATATTTCCAGCATAAATAGCAACTCCATCAAGTCACGCACCCTGGGT
TTTCTCTAAACATAGTAGTCCCTGACATCAAGTATATGACAAAGGGGTCT
GCTGACCTTGAATAAAAACACTTTGTTCTTTCTCTGTCTGCACTGGAGGG
GTCTGAGGCATGTCCCTCTGATGAAGAAAGTATAGAACTGACATTTGAGA
GTAAGGAGTGTGTCTCATACATTCATGTATTGCTCTGGTGTGCTTAAAAC
TAAACTGTTAATACCAAGAATTCACAGGAGTTTCACTCTTTGTTCATGGC
TTACTCAGGTCTACCATTCAACTAATATAGACCATAGATTCTCTCAGAAA
TTATTGTTTAGGGGATACACCTTTCACCACCAAAAAACTCATAGAAGTCT
GGATTCTAGTCCCATGGTCAATGAATAAAAACTTCAGCCTAGATCCAAGG
TCAACTCTCTTTAAGTTGCTCATCATATAGGGAATTGTCCTCAACACCCA
TACTTGTGTGGCCTATTGTAAGTATTAATAGGTAACAGATCCTGCGACCT
GGAGCATTCTTGTCTTATTATCACTCACATTGCTGCCATTTGCGCATCAT
ATTCCCTAGGTTTATTCACTTTTTTTACCTTTTCTATTTTTTGT

NCCGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAAGAAAAAACTTATGGCA
TAGCATTGAGGCAATGACACAAGGAAATAATTAGATATTAGAAAGTGCAC
CTGTGTTTCTGAATGATGCAAGCCTTTATTGCTGTGTAGCCAAAGGGAAA
CCGAAATCCTCCAGAAAAATCAAAGAGAGGAGCCAAATAAACACCTTTCA
TCCAGCAAGATCAAAAACTGCTCTTAGAAAACTGGCAAGGTATGCAACAG
GCAAACGAAGTTTCTGTGTCAGTAAAGAAGGATCTTCACTTATAGCCTCA
ATTTTACACTTTCTTAGTGTATCAATTTCTATAAAACATGACCTCTCAAA
GAATCAGTTTAACTAAGGGTTTAATAAATCATTCTGTGCAACTATATACC
GGCTGCATCATTGGACTGAAAGTGAATGGCCCATGTGTTGCCACTGATGT
GAGACATTTGCCTGTTGTCCTTCAGGAGAATTATATGATCTTCAACAAGC
AATCCAAATATGAAAAATTAATAGGAACCCAACTCACGAACTGTGACAGA
CAAAGCAATTGTTTAAGGCCACCAGTGATATATTCATGAGTCCCACTTTG
TCTGAGATCTGGATCTAATCCAACCCAGAAATAGTATTTTGAATAAAAAC
TTTCTTTTGTACTAAAAAAGAATCTAAAAGTTTTGTCCTTTTTCTTTGCA
ACAAAAAAAATAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_k07.g1 MSMg01no430_k07.g1 CHROMAT_FILE:
MSMg01no430_k07.g1 PHD_FILE: MSMg01no430_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:35 2005
         (438 letters)



>mm_chrX_140471643_140472481
          Length = 839

 Score =  352 bits (182), Expect = e-101
 Identities = 302/346 (87%), Gaps = 11/346 (3%)
 Strand = Plus / Minus

                                                                       
Query: 86  tgatgcaagcctttattgctgtgtagccaaagggaaaccgaaatcctccagaaaaatcaa 145
           ||||||||| ||| || |||||||||||| |||||||| ||||| || || |||||||||
Sbjct: 626 tgatgcaaggcttcatggctgtgtagccagagggaaacagaaattcttcacaaaaatcaa 567

                                                                       
Query: 146 agagaggagccaaataaacacctttcatccagcaagatcaaaaactgctcttagaaaact 205
           |||||| | ||||| |||| |||||||||||||||||||||||| | |||  ||||||||
Sbjct: 566 agagagcacccaaacaaacccctttcatccagcaagatcaaaaaattctcaaagaaaact 507

                                                                       
Query: 206 ggcaaggtatgcaacaggcaaacgaagtttctgtgtcagtaaagaaggatcttcacttat 265
           |||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 506 ggcaaggtgtgcaacaagcaaaccaagtttctctgtcagtaaagtaggatcttcacttat 447

                                                                       
Query: 266 agcctcaattttacactttcttagtgtatcaatttctat-aaaacatgacctctcaaaga 324
           |||||||||||||| ||||||  ||||| ||||| || | |||||||||| | |||||||
Sbjct: 446 agcctcaattttactctttctcggtgtaccaattgctgtcaaaacatgacatttcaaaga 387

                                                                       
Query: 325 atca----gtttaactaagggttt-aataaatcattctgtgcaactatataccggctgca 379
           ||||    ||    |||||| ||| || |||||||| ||||||||||||| || ||||||
Sbjct: 386 atcaacttgt----ctaaggatttcaa-aaatcattttgtgcaactatattccagctgca 332

                                                         
Query: 380 tcattggactgaaagtgaatggcccatgtgttgccactgatgtgag 425
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tcattggactgaaagtgaatggcccatgtgttgccactgatgtgag 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 839
Length adjustment: 9
Effective length of query: 429
Effective length of database: 830
Effective search space:   356070
Effective search space used:   356070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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