BAC Information

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BAC

Clone NameMSMg01-432N09
ChromosomeX (Build37)
Map Location 19,132,407 - 19,132,655
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043098, EG628855, LOC385333, EG628871, LOC100043953, BC049702
Downstream geneLOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432N09.T7 (MSMg01no432_n09.b1)MSMg01-432N09.TJ (MSMg01no432_n09.g1)
ACCAG524760AG524761
length856850
length of high quality
(start - end)
271 (39 - 309)251 (70 - 320)
definitionCHROMAT_FILE: MSMg01no432_n09.b1 PHD_FILE: MSMg01no432_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:43 2005CHROMAT_FILE: MSMg01no432_n09.g1 PHD_FILE: MSMg01no432_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGAATGCGCGGAATTCTCA
CCTGTTGCCTACCGAATGGCAGAGAAGCACTTGAAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCT
GGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGCTCCTCAGAAAACTG
GACATAGCACTACCTTTATTGCTTGCAACACCTCTCCTGGGCATATATCC
AGAATATGTCCCCACAGGTAAGAAGGACACATGTTCCTCTATGTTTCATA
GCAGCCCCACCCCCCCTAATTCTAATCTGTACTTTATCTAGTATTTTTCT
CTCCATCATTCTATGCCTATTGTCTGTATGTTTCCTCCTCTGTTTCCATG
TTAACCTTCTACCTGTTTCTTTTCTACTCCCGCTATTTCCCTCCACCTCT
TCTCCCCCTTCTTCATTGCCCTCCTTTTGCTCTCCTTTATGCTATGCTAT
ATTAATTACTTTATTCTTCCTCTTTTCATATTTTTCCCTTTTCTTTCTTT
TATTTTTCTTTTCTCCACGTACTCCTAACCTCTCCTTTTTTTTTTCTTCC
TTTCTTTTTTTTCTTTTCCTACTTTTTTATTCCTCTCTTTTCTATCTACT
TTTCTCCACTTTAATTCGCTTTCCCTTTTTCCCGCTCTTGGTCACTCCAT
TTATTGCGCCTAATACCCTCCCCTCCCTTTTTTATTCACCTTATCTCTCT
TTTTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTAATAAAAGCTATTCTTTCATTTTTGTT
TTTGAACATTTTATGTATGTTATTGTAAAACCTTCATTAGACTATTATAT
GAAAGTAATTTGCTATGGAATGAATTTGTCAGCAACTCATTGGCTGAATC
TCTTTTACAGTATTAGATCTCTCCTTGCACAGACAAATTTTGATTTGTAG
CTTCACTATTTTTTTTCTCTCTCTCTTACTTGCCTTTGCATTCTCCCTTC
TATTCTGACAGTTTTATATTCTGTAATTAAGTCTGATAGTTATACTTCAG
AATTCTTCTCTCACATTGATCTAACTAATACATAGACAGCAGTTATGTTC
CTTCATCTCCACCCTTCATGTTAGTTGTTTGCCCCCTTCTATTCTTTCCA
TCCTTGTTTTTTGTTGTTTTCTTATTCCTCTTCCTCCTCCCTCAGTTTCC
TCCCTTATTTCTCTGTTCTTTTCCACATTCTTCCCTTCATCTCTCTCTTC
ACCTTTCTTTTTTTTCCTTCCCCTTTTCCTCCCTATATCTTATTTCCTAT
TTCTTGTTACCCGTTCTTTCTCCTTTTCTTCTCCCCTCCCCTTCTTTTTT
TCCTTCCTTCTTTTCCTTCCCTTTATTACCTTCCTCTCATTCCTTCATAT
TTTTCCTCTCTTCTTTTTTCCCCTCTTTTACCACTCCCCCATCATTCCTC
TTCTTATTTCTCCTTCATCCTTCCCTTCATTTCTCCTCCTCTCTCCTTTT
TTTATTTTCATTCATTCCCCATTACCTATATCTTCCATTTACATTTCTCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_n09.g1 MSMg01no432_n09.g1 CHROMAT_FILE:
MSMg01no432_n09.g1 PHD_FILE: MSMg01no432_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:43 2005
         (251 letters)



>mm_chrX_19132207_19132857
          Length = 651

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaataaaagctattctttcatttttgtttttgaacattttatgtatgttattgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaataaaagctattctttcatttttgtttttgaacattttatgtatgttattgtaaa 260

                                                                       
Query: 61  accttcattagactattatatgaaagtaatttgctatggaatgaatttgtcagcaactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttcattagactattatatgaaagtaatttgctatggaatgaatttgtcagcaactca 320

                                                                       
Query: 121 ttggctgaatctcttttacagtattagatctctccttgcacagacaaattttgatttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggctgaatctcttttacagtattagatctctccttgcacagacaaattttgatttgta 380

                                                                       
Query: 181 gcttcactattttttttctctctctcttacttgcctttgcattctcccttctattctgac 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttcactatttttttcctctctctcttacttgcctttgcattctcccttctattctgac 440

                    
Query: 241 agttttata 249
           |||||||||
Sbjct: 441 agttttata 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)