BAC Information

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BAC

Clone NameMSMg01-433B23
ChromosomeX (Build37)
Map Location 56,259,365 - 56,441,949
singlet/doubletdoublet
Overlap geneFgf13
Upstream geneZic3, LOC631581, LOC631621, 4930550L24Rik
Downstream geneF9, EG434782, Mcf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433B23.T7 (MSMg01no433_b23.b1)MSMg01-433B23.TJ (MSMg01no433_b23.g1)
ACCAG524978AG524979
length760759
length of high quality
(start - end)		441 (41 - 481)364 (69 - 432)
definitionCHROMAT_FILE: MSMg01no433_b23.b1 PHD_FILE: MSMg01no433_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:07 2005CHROMAT_FILE: MSMg01no433_b23.g1 PHD_FILE: MSMg01no433_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,441,582 - 56,441,949)(56,259,365 - 56,259,728)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCATCTGTGGCACCCAGAATTTTAGAGTGATGGCTTTGAGTTCTTCTCCC
TGAAGATTGCTGAGAAGAAATTTTCAGGCCACTCGAATTATCATTAATCA
CACCAATTCTTACTGATCATAGTAGTGAAAGACTGAAGTACCATTTAGAG
CCTTGATTCTCATAGCGTGGTCCATGGACTGACAGCATAAAATGAAGGAT
CTCAGTCCCCATCCCAGACTGCCTGAGAGAAATTTTGAATTTTAACAAGT
TCGCAGCAAATGGGCTTTTGTATACACATTAAGCTTTGAGACACATCATT
GAATGCTGACATGGGCTTATGTAGTACTTCTATCTTGGGAGAAAGAAATA
GTAAGATTATTATTGTTTTGTTCATTTTAAGAAGAAGGGAAAGAAGCCAC
TGCTGTAGGCTTATTGAGGCAATGCGAGGCTTTGAGGAGATTATAATAGA
AACAACCTCCCTCATTCACTTCACCTTTTTTTTTGTGCACAGTTGGGACA
TTTACCATTAACTGGAGGTACCGGATTCCCCCCCCTGCCGGAAAAAAAAA
AAAAACCTAATTTTGTTCCCGTGGAAGGAAAAAACATCCCTTTTTCCTAT
CCCCTTTTAAAATCTTATAATTTATGGGGGTTTTCCAAAAAATTTTATAT
CCCCCCTCAAATGGTTTGGTTTATCCGGCCCCCGTTATCCTAGCGGGGAA
AATCTTCTAC

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCAGATACACGAGGCTGACTTCAAATGTGTA
GCTATCCTCCTACCACTGCCTCCCAATGCTGGGATTAAAGATGTGTGCCA
TCACATAAGAACAATACTTTAATGTACCTCTCTTAATATCATGCTAGTAG
AGCTCTGAAAACTCTGACCTTTCAAGATCTCTAGGTCACTCTCCTTGTGC
AATTGTTCATGTGTAAAAACGAGCTTAGTGGAATGTTGTTTGTCCTCTGA
GAAAGTAGTATCACAAATATTGGGCTATTGGATTACTAAATGATGATTTA
TGAATTTTTGGTATTTATGTAAAGGAAGGGAACAAAACATGAAATGTAAT
CAAAAATTTCTGTGCCTTGTTTTATATCCTAAGACAAGTTTGATTATTAG
GAAGATGAGCTACTGGATATATACCAAGAGAGTGGACCGTGCAGTATTGA
AACGTTGCTTGCATCCCCCATTTTCCAAATGGAGAAAACACCCTCTTTTC
CCTGGCCTCAACTTTGTTGTTTAAGCTTTACCATTTCACCCTGTATTTAG
TCTTTCTACCCCCCCTTTTTTTTTATACCCCATTCCCCAAAATCTCTTCT
TCCTCTCTTTGTCTCTTTCCCTCTTTTCCTTTCTTTCTCCCTTCCGCTTA
ACCCTTCCTTTTTACCTGTTTTTTCATTTCCCCCTTCCCCTTTTTCCTTG
TCCACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_b23.b1 MSMg01no433_b23.b1 CHROMAT_FILE:
MSMg01no433_b23.b1 PHD_FILE: MSMg01no433_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:07 2005
         (441 letters)



>mm_chrX_56441582_56442422
          Length = 841

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatctgtggcacccagaattttagagtgatggctttgagttcttctccctgaa 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 368 gaattctcatctgtggcacccagaattttagagtgatggcttggagttcttctccctgaa 309

                                                                       
Query: 65  gattgctgagaagaaattttcaggccactcgaattatcattaatcacaccaattcttact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gattgctgagaagaaattttcaggccactcgaattatcattaatcacaccaattcttact 249

                                                                       
Query: 125 gatcatagtagtgaaagactgaagtaccatttagagccttgattctcatagcgtggtcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gatcatagtagtgaaagactgaagtaccatttagagccttgattctcatagcgtggtcca 189

                                                                       
Query: 185 tggactgacagcataaaatgaaggatctcagtccccatcccagactgcctgagagaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tggactgacagcataaaatgaaggatctcagtccccatcccagactgcctgagagaaatt 129

                                                                       
Query: 245 ttgaattttaacaagttcgcagcaaatgggcttttgtatacacattaagctttgagacac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ttgaattttaacaagttcgcagcaaatgggcttttgtatacacattaagctttgagacac 69

                                                                       
Query: 305 atcattgaatgctgacatgggcttatgtagtacttctatcttgggagaaagaaatagtaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  atcattgaatgctgacatgggcttatgtagtacttctatcttgggagaaagaaatagtaa 9

                   
Query: 365 gattatta 372
           ||||||||
Sbjct: 8   gattatta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no433_b23.g1 MSMg01no433_b23.g1 CHROMAT_FILE:
MSMg01no433_b23.g1 PHD_FILE: MSMg01no433_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:07 2005
         (364 letters)



>mm_chrX_56259165_56259928
          Length = 764

 Score =  658 bits (340), Expect = 0.0
 Identities = 358/364 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagatacacgaggctgacttcaaatgtgtagctatcctcctaccactgcctcccaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagatacacgaggctgacttcaaatgtgtagctatcctcctaccactgcctcccaatg 260

                                                                       
Query: 61  ctgggattaaagatgtgtgccatcacataagaacaatactttaatgtacctctcttaata 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggattaaagacgtgtgccatcacataagaacaatactttaatgtacctctcttaata 320

                                                                       
Query: 121 tcatgctagtagagctctgaaaactctgacctttcaagatctctaggtcactctccttgt 180
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 321 tcatgctagtagagctctgaaaactctaacctttcaagatctctaggtcactctccttat 380

                                                                       
Query: 181 gcaattgttcatgtgtaaaaacgagcttagtggaatgttgtttgtcctctgagaaagtag 240
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaattgttcatgtgtaaaaccaagcttagtggaatgttgtttgtcctctgagaaagtag 440

                                                                       
Query: 241 tatcacaaatattgggctattggattactaaatgatgatttatgaatttttggtatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcacaaatattgggctattggattactaaatgatgatttatgaatttttggtatttat 500

                                                                       
Query: 301 gtaaaggaagggaacaaaacatgaaatgtaatcaaaaatttctgtgccttgttttatatc 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gtaaaggaagggaacaaaacatgaaatgtaatcaaaaatttctgggccttgttttatatc 560

               
Query: 361 ctaa 364
           ||||
Sbjct: 561 ctaa 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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