BAC Information

Click to search

BAC

Clone NameMSMg01-433J24
ChromosomeX (Build37)
Map Location 20,013,270 - 20,040,093
singlet/doubletdoublet
Overlap genePhf16
Upstream geneBC049702, LOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283
Downstream geneRgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268, EG629024, EG331392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433J24.T7 (MSMg01no433_j24.b1)MSMg01-433J24.TJ (MSMg01no433_j24.g1)
ACCAG525364AG525365
length782771
length of high quality
(start - end)		229 (41 - 269)359 (69 - 427)
definitionCHROMAT_FILE: MSMg01no433_j24.b1 PHD_FILE: MSMg01no433_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:46 2005CHROMAT_FILE: MSMg01no433_j24.g1 PHD_FILE: MSMg01no433_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,013,270 - 20,013,495)(20,039,737 - 20,040,093)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCATGACTCCTTCCCAACTTGACTTGATGAGATTAAAAGAAAAAGAAATT
CCAGGTAAGATTTTTCCCCTTGAAATGCTTCTTGGTATAGTTCTGACTTT
TTTTTTTTTTTTTTTTTTTTTGGGGTGCTGGGGTGGGCATTGAGCCTATG
CAGATTTTTCCGGTTTTCCGTGTACTACATACATACTATACCACTGAGCT
ATACCTCCAGCATTGAATTACGTGCGCATGTAGACTAGAGGAAAGTGACG
TGATACATAGCTAGCCTTTTTTTTTCGCGCCCCACACTGCCTTCTACGGC
GTTTGCTTTCCTCTCACATTCCTCGCCATCTCCCGTCACTCGCCCCTCTT
TTCCATCTCTTTTTTTCGACTCCCCCCCCCCTCCCACCCGCTATCCTCCA
TCATACCCCACTCTCCACCACACCGCCTCCACCAACACACCCCACCCCAA
CCTCCCCCTATCTCCCCTCCACCCCCCATCTATTCCTCCCCTCCCTCAAT
CTCCATCATTTCCCCCCTCTTCTCCTCCGTACTCGTCCCGCACCACTCAC
ATCTTTACCTCTTTTACTTCAATACCCTTCCTAACTTATGTTCCCACACA
CCACCTTTCCATCATCTCCTCGCTCCCTCCCTTCTTTATCTCACACCCGC
CCCCCCCCATCACCATATCGTGCTTTCCTTCTACCCCCCCTACTTATCTA
CTTTTTTTTCCCCTCCCTCCTCACCCGCTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTCTAATCCCCAGTGAGAACATTCCAGTGA
GCACAGTGGTTGCAGACCTGAAAAGACTATGAACACAGAATCTAGCCACA
CTCAATGTAGATTCCTGACCACAGAAACAGATAATAAATGTATATATACT
GTTTTAAGCCACTAATTTTACTATTTGCAATGCAGAAACAGATTAACTAC
CTAAAGAATTTTACTTATAGTGGAAATGAAGATTCATAGGGTCAATTTCT
AATAATTTAATTTCCACTGAGGAAAATCTTTATGACCCACTAAATGCAAG
TACAATCTTGGTAGTTTGGTGCTCTTAGGGCAGAGTCCAAGCATCAGAAA
AATGATCTAATTTTTGCTGGGCTAGNTATGTTTCCAAAGCTGTCAGCTTT
CTTGAACTATCTTCCACCTTCTAATGCCACTCTTTTCAACATGAAGGTAT
TAGGGCTTGGGAACTTTCTAAAATTCCCCCAAGTCTGATTTTTTTATTTA
TGGGAGGACCACCGTTAAAGCGGAAAAAATTCAATCTCCCCCATTAAACC
ACCGTCAAACTTACCCTTTCTTCCAGGAAAAAAAAAAAAACCCTTTTTTT
TTTAGATACCATTTCTTTTCCGTTACCGCCCCCACTCTCCTTCGTCTCCC
CGTGCGTTCACTTCTCCCTCTTCTCTTCTTTAACTTCTTCGCTTACCTTT
CCGCTTTTCGTTTCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_j24.b1 MSMg01no433_j24.b1 CHROMAT_FILE:
MSMg01no433_j24.b1 PHD_FILE: MSMg01no433_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:46 2005
         (229 letters)



>mm_chrX_20013067_20013695
          Length = 629

 Score =  429 bits (222), Expect = e-125
 Identities = 225/226 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccatgactccttcccaacttgacttgatgagattaaaagaaaaagaaattcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccatgactccttcccaacttgacttgatgagattaaaagaaaaagaaattcca 263

                                                                       
Query: 64  ggtaagatttttccccttgaaatgcttcttggtatagttctgactttttttttttttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtaagatttttccccttgaaatgcttcttggtatagttctgactttttttttttttttt 323

                                                                       
Query: 124 ttttttttggggtgctggggtgggcattgagcctatgcagatttttccggttttccgtgt 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttttttgtggtgctggggtgggcattgagcctatgcagatttttccggttttccgtgt 383

                                                         
Query: 184 actacatacatactataccactgagctatacctccagcattgaatt 229
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actacatacatactataccactgagctatacctccagcattgaatt 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no433_j24.g1 MSMg01no433_j24.g1 CHROMAT_FILE:
MSMg01no433_j24.g1 PHD_FILE: MSMg01no433_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:46 2005
         (359 letters)



>mm_chrX_20039363_20040121
          Length = 759

 Score =  683 bits (353), Expect = 0.0
 Identities = 356/357 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctaatccccagtgagaacattccagtgagcacagtggttgcagacctgaaaagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttttctaatccccagtgagaacattccagtgagcacagtggttgcagacctgaaaagact 672

                                                                       
Query: 61  atgaacacagaatctagccacactcaatgtagattcctgaccacagaaacagataataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atgaacacagaatctagccacactcaatgtagattcctgaccacagaaacagataataaa 612

                                                                       
Query: 121 tgtatatatactgttttaagccactaattttactatttgcaatgcagaaacagattaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgtatatatactgttttaagccactaattttactatttgcaatgcagaaacagattaact 552

                                                                       
Query: 181 acctaaagaattttacttatagtggaaatgaagattcatagggtcaatttctaataattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acctaaagaattttacttatagtggaaatgaagattcatagggtcaatttctaataattt 492

                                                                       
Query: 241 aatttccactgaggaaaatctttatgacccactaaatgcaagtacaatcttggtagtttg 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aattttcactgaggaaaatctttatgacccactaaatgcaagtacaatcttggtagtttg 432

                                                                    
Query: 301 gtgctcttagggcagagtccaagcatcagaaaaatgatctaatttttgctgggctag 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtgctcttagggcagagtccaagcatcagaaaaatgatctaatttttgctgggctag 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |