Query= MSMg01no433_k03.b1 MSMg01no433_k03.b1 CHROMAT_FILE:
MSMg01no433_k03.b1 PHD_FILE: MSMg01no433_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:47 2005
(495 letters)
>mm_chrX_41041794_41042688
Length = 895
Score = 905 bits (468), Expect = 0.0
Identities = 489/496 (98%), Gaps = 2/496 (0%)
Strand = Plus / Minus
Query: 1 gtaatgcatagtttaaattgattgtcaaatacaaggacatacacaaagactttggcattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtaatgcatagtttaaattgattgtcaaatacaaggacatacacaaagactttggcattt 636
Query: 61 ctgagcctttcatggatgcatc-tttgacaggtgatttaagtcaattcatgcttcaaagg 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctgagcctttcatggatgcatcttttgacaggtgatttaagtcaattcatgcttcaaagg 576
Query: 120 aacataaacaaacttggccatggaaggatgtaaaatgggacacatgaacatattgtttag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aacataaacaaacttggccatggaaggatgtaaaatgggacacatgaacatattgtttag 516
Query: 180 caacacttgtttcactgaaaatttcttgacctattcacactaggaagacatagaaacact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 caacacttgtttcactgaaaatttcttgacctattcacactaggaagacatagaaacact 456
Query: 240 tactttcattgtcttaatttataaccattttaataataaacatgtacattttgttcacct 299
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tactttcaatgccttaatttataaccattttaataataaacatgtacattttgttcacct 396
Query: 300 atttgtcatatgaaatgatattaagaacctgtaagctagatatagtacctgaaaaaaaaa 359
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 395 atttgtcatatgaaatgatattaagaacctgtaaactagatatagtacctgaaaaaaaa- 337
Query: 360 tacttttttatcttaattagtaagtcaaatctgattctgaattacaatatacattacttt 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 336 tacttttttatcttaattagtaagtcaaatctgattctaaattacaatatacattacttt 277
Query: 420 cttgtcctgaaatgtcaaaattctgatcaggaggttagaagggtagcatattgtaaacta 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 276 cttgtcctgaaatgtcaaaattctgatccggaggttagaagggtagcatattgtaaacta 217
Query: 480 atgcctcttcttcctg 495
||||||||||||||||
Sbjct: 216 atgcctcttcttcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_k03.g1 MSMg01no433_k03.g1 CHROMAT_FILE:
MSMg01no433_k03.g1 PHD_FILE: MSMg01no433_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:47 2005
(271 letters)
>mm_chrX_40849792_40850462
Length = 671
Score = 505 bits (261), Expect = e-147
Identities = 267/269 (99%)
Strand = Plus / Plus
Query: 1 caaagaatgtgattgtttaaacaagctctgggcagttgacatacaaatttcaatgggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagaatgtgattgtttaaacaagctctgggcagttgacatacaaatttcaatgggaga 260
Query: 61 tctctcataaggcctgatcgcagattaagagttacagacaatgactcttaagagagtgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tctctcataaggcctgatcgcagattaagagttacagacaatgactcttgagagagtgaa 320
Query: 121 tcagtctttctcatagatgaacccacttcttggtagttcaataccattttttatctgcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtctttctcatagatgaacccacttcttggtagttcaataccattttttatctgcca 380
Query: 181 cctcttctttaacaaatacatacatacaaataatgctaaatggattcagcaacacgtgtg 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctcctttaacaaatacatacatacaaataatgctaaatggattcagcaacacgtgtg 440
Query: 241 tgtgtgtgtgtgtgtgtgtgtgtgtgtgt 269
|||||||||||||||||||||||||||||
Sbjct: 441 tgtgtgtgtgtgtgtgtgtgtgtgtgtgt 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
