BAC Information

Click to search

BAC

Clone NameMSMg01-434J04
ChromosomeX (Build37)
Map Location 121,268,313 - 121,268,627
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434J04.T7 (MSMg01no434_j04.b1)MSMg01-434J04.TJ (MSMg01no434_j04.g1)
ACCAG526085AG526086
length765750
length of high quality
(start - end)
293 (38 - 330)512 (70 - 581)
definitionCHROMAT_FILE: MSMg01no434_j04.b1 PHD_FILE: MSMg01no434_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:01 2005CHROMAT_FILE: MSMg01no434_j04.g1 PHD_FILE: MSMg01no434_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
ACTTCTTCGGCTAATATCCTCTTATTACAGTTCATTTTACTTTGAGATTT
TATTTGTATAAAAATTGATAAAATGTTGAATAGATTCACAAAAAGAAATC
TTAGTAATTTACTGTTTATTTACTATGTCATGGACGTTTTAATTATTATC
ATAGAGTATAAAATAAGATGTGAATGTGAGAAAGAAATTTAGAGAACGAA
TTGGAAGGTGAGGATGGAAGGTGTCAAAATTTGGGTTTTGTGGTTATGAA
GAGACACTATGACCACTGTAATTCCTCGTAAAGCAGAAAACTTTGCTGGG
GCTGACTTACAGCTTCAGAGGTTAATTTCATTATTGTCTTGCCAAGAAGT
ATGGTAGTTTTCAGGAAGATCTTTTGTTATAGCCGGAGATGAAGCCTAGA
GCTCCTAATCTTCATCCACAGGCAGCTTAAAGAGGCTGTCTACTCACTGG
TCATACCTGATCATATCTGATCTCATTACCTGCCCTCTAGCGACTGTCTT
CCTTGATTGATCACTATACTACATCTGGCCCCAGACTCGCTCCTTTCCTG
CTTGCTCCCTGCTACGTCTTGCCTTTGGCCTAATTTATTTCTTTCCTTTT
CGTCTCGTCCCGCCACGCCTTCTCTCCTTACGCTTCTAACCCTTTCCCCT
CCCCCCTTTTCCCCCCCTTCCTCCTGCCCCGTACCAACTTTCTTCTTTTT
TCTTCTTTCTCGCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTC
TGGTGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCAATATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAGGAACACAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCTCTAAGGAACTCACACAAAATGTACTCCCTGATAAGTGGATA
TTAGCCCAAAACCTAAGATACCCAAGAAATAAGATACCATTTTCCCTACC
ACATGGAAACTCCCCAAAAAATGAAGATTGAGGGGTGAAAACTTATTTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_j04.b1 MSMg01no434_j04.b1 CHROMAT_FILE:
MSMg01no434_j04.b1 PHD_FILE: MSMg01no434_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:01 2005
         (293 letters)



>mm_chrX_121268104_121268796
          Length = 693

 Score =  333 bits (172), Expect = 9e-96
 Identities = 267/318 (83%), Gaps = 35/318 (11%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtacttcttcggctaatatcctcttattacagttcattttactttgagattt 63
           |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 524 ggaaatctgtacttctttggctaatatcctcttattatagttcattttactttgacattt 465

                                                                       
Query: 64  tatttgt------------------------------ataaaaattgataaaatgttgaa 93
           |||||||                              ||||||| |||||||||||||||
Sbjct: 464 tatttgtattcgaaacaagaacagtgttacatttgtgataaaaa-tgataaaatgttgaa 406

                                                                       
Query: 94  tagattcacaaaaagaaatcttagtaatttactgtttatttactatgt-catggacgttt 152
           || ||| ||||||||||||||||||||||||||||||||||||||| | | ||||| |||
Sbjct: 405 taaattaacaaaaagaaatcttagtaatttactgtttatttactat-tacctggaccttt 347

                                                                       
Query: 153 taattattatcatagagtataaaataagatgtgaatgtgagaaagaaatttagagaacga 212
           |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct: 346 taatcattatcatagagtataaaataaaatgtgaatgtgagaaagaaatgtagagaaaga 287

                                                                       
Query: 213 attggaaggtgaggatggaaggtgtca-aaatttgggttttgtggttatgaagagacact 271
           |||||| ||| |||||||||||||| | ||||||||||||||| ||||||||||||||||
Sbjct: 286 attggagggtaaggatggaaggtgt-agaaatttgggttttgttgttatgaagagacact 228

                             
Query: 272 atgaccactgtaattcct 289
           |||||||| |||||||||
Sbjct: 227 atgaccacagtaattcct 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)