XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCT
CTTATGTCATGGGTCTAAGGCTGGACCACTCCCACAATTTCTGTGCCACC
TTTACCCCGTCACTTCTTGCAGGCAGGACAAATTGTAGGTTGAAGGTTTC
ATTCCTGGGTTGGTGCTCCAATTACTCCACTGGAAGTGATATAAGGTTAC
AGGAAATGGCCCATTCAGGCTCCACATATCCCTTTACTAGGAGTCTTTTT
TGTGTGTGAGGGGGGTTGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTTTTTTCTCCTCTCCTTTTTTTCTTTTTTTTTTTCTTTTTTTC
TTTTTTCTTCTTTCTCCCCCTTTTTTCTTTCTTCTTTTTTCCTTCCTTTT
TTTTCTCCTCTTCTTCTTCTCTCTTTTTCTTCCTTTTTCTCTCTTCCTTC
CTTTCTCTCCCTTCTTCTCTTTTCTTCCTTTCCTTCTTTCTTCTTCTTTC
TCTTTTCCTCTTTTTCTCTCTCTTCTCTTCCCTTCTTCTCTTTCCTTTTC
TTCTTTTTCCCCGTTCTTCTCCTTCTTTTATCCTTTTCTTTCTTCCTTTC
CTTTTCTCCTTTTTCTCCTTTTTCTTTTTCTTTCNTCTTTCATCTCATTC
CCCCTTTCTATTCACATATTTTTTTTTTCTTTCTTCTTCGAAGTTTTACG
TTCTTCCTTATCATTATTCTGACTGGTATATCCACTCTGTATGTTATCTA
TATCTTATTAATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATGAATTTGAGATATAACAAGGGGTATAGA
TGGTAGGAACTAGAGGGTTGAAAGGGAAAATTATATAATTACATTTTAAT
TTCAAAAAATTAATGTCATAAAAATGGCACCACAGGTCTATAGCATTTGT
GAATATATATGTAAATACTCTTGCTACCACACAAACACACACACAACCTG
TATATGGCATGTATAGAAAGACAATTATGTTGTGATCCTTTGAGGATTAT
ATCAGGAATATAAAGTCTTTTTCAAAATAAAAATATTTGTAAACATAATT
TGAAAAATAAAATTGAGGTCAAGAACTAGAGGATCACCCCAGGAAACTAT
TTGACAAATTCTAATATATCTTCTAATTTAAGAAAATCTTAGTGAACTTA
TTTAGCCTGATAAAGAAAATATATTTTACAAAATAGAGATAATCTAAAAT
TCCTTTCTCTTTTGTTTATATTATTAGGACAAATAAAATATAATTTCTTT
TACCAGTTATATTAAATATGGTTCCCAAATGAGATGAGACAAGTTTATAA
GTTTTCTTTTATGAGAATAATTCACATCTTATAAATGATTTTTTTTTTAC
AACCCCCCCAGACCAGTAGGAATTTCTATGTTTTTATTTTAACTCCCAAG
CTCCCCATCAAAACATGTTCCTTTTT

Query= MSMg01no434_l11.g1 MSMg01no434_l11.g1 CHROMAT_FILE:
MSMg01no434_l11.g1 PHD_FILE: MSMg01no434_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:13 2005
         (516 letters)



>mm_chrX_111016844_111017759
          Length = 916

 Score =  944 bits (488), Expect = 0.0
 Identities = 509/520 (97%), Gaps = 8/520 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaatttgagatataacaaggggtatagatggtaggaactagagggttgaaagggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 catgaatttgagatataacaaggggtatagatggtaggaactagagggttgaaagggaaa 751

                                                                       
Query: 61  attatataattacattttaatttcaaaaaattaatgtcataaaaatggcaccacaggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 attatataattacattttaatttcaaaaaattaatgtcataaaaatggcaccacaggtct 691

                                                                       
Query: 121 atagcatttgtgaatatatatgtaaatactcttgctaccacacaaacacacacacaacct 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 690 atagcatttgtgaatatatacgtaaatactcttgctaccacacaaacacacacacaacct 631

                                                                       
Query: 181 gtatatggcatgtatagaaagacaattatgttgtgatcctttgaggattatatcaggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gtatatggcatgtatagaaagacaattatgttgtgatcctttgaggattatatcaggaat 571

                                                                       
Query: 241 ataaagt----ctttttcaaaataaaaatatttgtaaacataatttgaaaaataaaattg 296
           |||||||    |    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ataaagtccagc----tcaaaataaaaatatttgtaaacataatttgaaaaataaaattg 515

                                                                       
Query: 297 aggtcaagaactagaggatcaccccaggaaactatttgacaaattctaatatatcttcta 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aggtcaagaactagaggatcaccccaggaaactatttgacaaattctaatatatcttcta 455

                                                                       
Query: 357 atttaagaaaatcttagtgaacttatttagcctgataaagaaaatatattttacaaaata 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atttaagaaaatcttagtgaacttatttagcctgataaagaaaatatattttacaaaata 395

                                                                       
Query: 417 gagataatctaaaattcctttctcttttgtttatattattaggacaaataaaatataatt 476
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 394 gagataatctaaaattcctttctcttttggttatattattaggacaaataaaatataatt 335

                                                   
Query: 477 tcttttaccagttatattaaatatggttcccaaatgagat 516
           |||||||||||||||||||||||||||||| |||||||||
Sbjct: 334 tcttttaccagttatattaaatatggttccaaaatgagat 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)