BAC Information

Click to search

BAC

Clone NameMSMg01-435A23
ChromosomeX (Build37)
Map Location 59,698,238 - 59,698,366
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039778, Ldoc1, LOC654353, EG627299, LOC666654, LOC385367, LOC671741, 4933402E13Rik
Downstream gene4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695, EG627420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435A23.T7 (MSMg01no435_a23.b1)MSMg01-435A23.TJ (MSMg01no435_a23.g1)
ACCAG526452AG526453
length832818
length of high quality
(start - end)
129 (189 - 317)---
definitionCHROMAT_FILE: MSMg01no435_a23.b1 PHD_FILE: MSMg01no435_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:39 2005CHROMAT_FILE: MSMg01no435_a23.g1 PHD_FILE: MSMg01no435_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGAGGCCTTACCTTGAATTGAGCATGATTATCAAATGGAAGTTAGATCAC
TGTGCAAAGACCAGACTGTGTGCATTTTTTCATATATATTTTTCATATTG
AGATGTGGGTATGATATATGATATAATTTCATAAGATTCATTCCCACATT
GTTTTCTTAGTAACTACCTTAGTGTTTAACTCAGAGAAGGACAATGTTTT
CATATTTTCTCAAAGTGCATATGGTAAATGGATAACTACATAATTAAATT
TCACTATTTAAATAATTACTATTTTTTTGGGTTCCTTCATGGCATAAGAG
TCTCATTGTGTGACCTCAACGATNCTAATTTTAGCTACTTGTAATATGAC
AATCCACTGGTCAATGCCCGCACTGCCTACTATTTAATGATTTTCTATGC
TCCTCACAAATTTATTCCTTGTCTTCTCCTTCCCAACTAATCATATTATT
CTTTATGCATTTTTCCCCACATTTATCCTTCTACTCTACCCCCCCTCTTC
CTGTTCTCTTCTTCTATTTTCTTCTTCCCTCTTTTTTCTCCCCTTTTTTC
TTTCCTTTCCCATTTTTTTTCCCTTTTCTATGTCCCTTTTTTCCCATCCC
TCTTTTCCCCTCGCTTATCCTACTTTTCTTTTTTTTCTATCTTGTCTTTC
CCTCCCCTTTTTTCCTTCTCCACTCCTTTCCCACCCCTTCCTTTTTTTTT
TCTTTTTTCCCTTTCTTTTTTTCCCCCCTTTTTTCCCTCCCCCCCCTTTT
TTTCCCTTTTCCCCTTTTCCCCCTTTCTCCCC
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTGTATTTACTATATATACATATTTTCGC
GCCCTCGTGGACTCGACATGACGTAAGCCAAACACCCCCAATAGTCCCGA
CGTATACCGAGTTGAACTGACTCAGTTGCTTAACATAGCGTATGACATCT
TATTTTATCGTTAGTTCTCTATACGTTTCTGATTGAGGGAAGCCTGCTAT
CTTGCTTACTGCTCTCTGAGCCAGGAAGACTTCGACCGCTTCATTGCCCT
CCCCGAATTCTTATTATCCTTGATATGAGGTTGATTCTACTTATAATCCC
AGAGCATCATCTGAGAAACCCCCAAGATACCCGTGCAAGCATCCTGCTTG
ATGTGCTGTTCTGATCGATTAGATCCAGGTCCTAGTGAAAGATGTGGTCT
CATAAAACAAGATGGAGAAGTTCTGAAGAATGACACCTGATTTGACCTTT
GACTTCCCCACATATATGCATACATTGCCACATCCCTTACATCTACCTAT
TGCCCCCGACACTTTATATTCCTTCCCCCTCTTTTTTCCTATTTTTCTAC
CCCCTTGATTCCCCCCCCTTTTCCCAAGCTTGAATCTTCTTGGACCTTAT
TTCTCCCTCTCCCTCTTTAAAGGAAAAATCCCCGTATCTTGCCTCATTAA
TCTTTTTTCTTTTTTTTAAATTTCTTTTGTTTCCAAACCTCCTTCCTCTT
CTTTTTTGTTTTTTTCTCCCACCCCCCTTTTTTTTTTTTCTCCAAACCTC
CCCTTTATTTCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_a23.b1 MSMg01no435_a23.b1 CHROMAT_FILE:
MSMg01no435_a23.b1 PHD_FILE: MSMg01no435_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:39 2005
         (129 letters)



>mm_chrX_59698038_59698566
          Length = 529

 Score =  242 bits (125), Expect = 7e-69
 Identities = 128/129 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcccacattgttttcttagtaactaccttagtgtttaactcagagaaggacaatgtt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cattcccacattgttttcttagtaactaccttagtttttaactcagagaaggacaatgtt 260

                                                                       
Query: 61  ttcatattttctcaaagtgcatatggtaaatggataactacataattaaatttcactatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatattttctcaaagtgcatatggtaaatggataactacataattaaatttcactatt 320

                    
Query: 121 taaataatt 129
           |||||||||
Sbjct: 321 taaataatt 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)